Antibacterial Potential of a De-Novo Designed Peptide Against Bacterial Fish Pathogens

Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195–201

Article  CAS  PubMed  Google Scholar 

Bahar AA, Ren D (2013) Antimicrobial peptides. Pharmaceuticals 6:1543–1575

Article  PubMed  PubMed Central  Google Scholar 

Bank W (2014) Reducing disease risks in aquaculture #88257-GLB

Bhat RAH, Thakuria D, Pant V, Khangembam VC, Tandel RS, Shahi N, Sarma D, Tripathi G, Krishnani KK, Krishna G (2020) Antibacterial and antioomycete activities of a novel designed RY12WY peptide against fish pathogens. Microb Pathog 149:104591

Article  Google Scholar 

Bhat RAH, Rehman S, Tandel RS, Dash P, Bhandari A, Ganie PA, Shah TK, Pant K, Yousuf DJ, Bhat IA (2021) Immunomodulatory and antimicrobial potential of ethanolic extract of Himalayan Myrica esculanta in Oncorhynchus mykiss: molecular modelling with Aeromonas hydrophila functional proteins. Aquaculture 533:736213

Article  CAS  Google Scholar 

Bhat RAH, Tandel RS, Pandey PK (2022a) Alternatives to antibiotics for combating the antimicrobial resistance in aquaculture. Indian J Anim Health 61:01–18

Google Scholar 

Bhat RAH, Khangembam VC, Thakuria D, Pant V, Tandel RS, Tripathi G, Sarma D (2022b) Antimicrobial activity of an artificially designed peptide against fish pathogens. Microbiol Res 260:127039

Article  CAS  PubMed  Google Scholar 

Bhat RAH, Thakuria D, Tandel RS, Khangembam VC, Dash P, Tripathi G, Sarma DJF, Immunology S (2022c) Tools and techniques for rational designing of antimicrobial peptides for aquaculture. Fish Shellfish Immunol 127:1033–1050

Article  CAS  PubMed  Google Scholar 

Bondad-Reantaso MG, Mackinnon B, Karunasagar I, Fridman S, Alday-Sanz V, Brun E, Le Groumellec M, Li A, Surachetpong W, Karunasagar I (2023) Review of alternatives to antibiotic use in aquaculture. Rev Aquacult. https://doi.org/10.1111/raq.12786

Article  Google Scholar 

Burridge L, Weis JS, Cabello F, Pizarro J, Bostick K (2010) Chemical use in salmon aquaculture: a review of current practices and possible environmental effects. Aquaculture 306:7–23

Article  CAS  Google Scholar 

Cabello FC (2006) Heavy use of prophylactic antibiotics in aquaculture: a growing problem for human and animal health and for the environment. Environ Microbiol 8:1137–1144

Article  CAS  PubMed  Google Scholar 

Cabello FC, Godfrey HP, Tomova A, Ivanova L, Dölz H, Millanao A, Buschmann AH (2013) Antimicrobial use in aquaculture re-examined: its relevance to antimicrobial resistance and to animal and human health. Environ Microbiol 15:1917–1942

Article  PubMed  Google Scholar 

Cárdenas C, Guzmán F, Carmona M, Muñoz C, Nilo L, Labra A, Marshall SH (2020) Synthetic peptides as a promising alternative to control viral infections in atlantic salmon. Pathogens 9:600

Article  PubMed  PubMed Central  Google Scholar 

Chaturvedi P, RaH B, Pande A (2020) Antimicrobial peptides of fish: innocuous alternatives to antibiotics. Rev Aquac 12:85–106

Article  Google Scholar 

Chaudhary K, Kumar R, Singh S, Tuknait A, Gautam A, Mathur D, Anand P, Varshney GC, Raghava GP (2016) A web server and mobile app for computing hemolytic potency of peptides. Sci Rep 6:1–13

Article  Google Scholar 

Clsi C (2012) M100-S22: performance standards for antimicrobial susceptibility testing; twenty-second informational supplement. CLSI document M100-S22. Downloaded from Journal. Nkums. Ac. Ir at 9:46

Google Scholar 

Dathe M, Nikolenko H, Meyer J, Beyermann M, Bienert M (2001) Optimization of the antimicrobial activity of magainin peptides by modification of charge. FEBS Lett 501:146–150

Article  CAS  PubMed  Google Scholar 

Dennison SR, Phoenix DA (2011) Influence of C-terminal amidation on the efficacy of modelin-5. Biochemistry 50:1514–1523

Article  CAS  PubMed  Google Scholar 

Dong J, Ruan J, Xu N, Yang Y, Ai X (2017) Expression, purification, and characterization of hemolytic toxin from virulent Aeromonas hydrophila. J World Aquacul Soc 48:531–536

Article  CAS  Google Scholar 

Dong J, Liu Y, Xu N, Yang Q, Ai X (2018a) Morin protects channel catfish from aeromonas hydrophila infection by blocking aerolysin activity. Front Microbiol 9:2828

Article  PubMed  PubMed Central  Google Scholar 

Dong N, Chou S, Li J, Xue C, Li X, Cheng B, Shan A, Xu L (2018b) Short symmetric-end antimicrobial peptides centered on β-turn amino acids unit improve selectivity and stability. Front Microbiol 9:2832

Article  PubMed  PubMed Central  Google Scholar 

Dong N, Wang C, Zhang T, Zhang L, Xue C, Feng X, Bi C, Shan A (2019) Bioactivity and bactericidal mechanism of histidine-rich β-hairpin peptide against gram-negative bacteria. Int J Mol Sci 20:3954

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ebbensgaard A, Mordhorst H, Overgaard MT, Nielsen CG, Aarestrup FM, Hansen EB (2015) Comparative evaluation of the antimicrobial activity of different antimicrobial peptides against a range of pathogenic bacteria. PLoS ONE 10:e0144611

Article  PubMed  PubMed Central  Google Scholar 

Epand RM, Epand RF (2009) Lipid domains in bacterial membranes and the action of antimicrobial agents. Biochim Biophys Acta (BBA)-Biomembranes 1788:289–294

Article  CAS  PubMed  Google Scholar 

Giangaspero A, Sandri L, Tossi A (2001) Amphipathic α helical antimicrobial peptides. A systematic study of the effects of structural and physical properties on biological activity. Eur J Biochem 268:5589–5600

Article  CAS  PubMed  Google Scholar 

Goldman MJ, Anderson GM, Stolzenberg ED, Kari UP, Zasloff M, Wilson JM (1997) Human β-defensin-1 is a salt-sensitive antibiotic in lung that is inactivated in cystic fibrosis. Cell 88:553–560

Article  CAS  PubMed  Google Scholar 

Han H, Li T, Wang Z, Teng D, Mao R, Hao Y, Yang N, Wang X, Wang J (2020) Improved stability and activity of a marine peptide-N6NH2 against Edwardsiella tarda and its preliminary application in fish. Mar Drugs 18:650

Article  CAS  PubMed  PubMed Central  Google Scholar 

Harris F, Dennison SR, Phoenix DA (2009) Anionic antimicrobial peptides from eukaryotic organisms. Curr Protein Pept Sci 10:585–606

Article  CAS  PubMed  Google Scholar 

Johnson SC, Bravo S, Nagasawa K, Kabata Z, Hwang J, Ho J, Shih C (2004) A review of the impact of parasitic copepods on marine aquaculture. Zool Stud 43:229–243

Google Scholar 

Kharidia R, Tu Z, Chen L, Liang JF (2012) Activity and selectivity of histidine-containing lytic peptides to antibiotic-resistant bacteria. Arch Microbiol 194:769–778

Article  CAS  PubMed  Google Scholar 

Kumar A, Mahajan M, Awasthi B, Tandon A, Harioudh MK, Shree S, Singh P, Shukla PK, Ramachandran R, Mitra K (2017) Piscidin-1-analogs with double L-and D-lysine residues exhibited different conformations in lipopolysaccharide but comparable anti-endotoxin activities. Sci Rep 7:39925

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lamiable A, Thévenet P, Rey J, Vavrusa M, Derreumaux P, Tufféry P (2016) PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex. Nucleic Acids Res 44:W449–W454

Article  CAS  PubMed  PubMed Central  Google Scholar 

Laskowski RA, Swindells MB (2011) LigPlot+: multiple ligand–protein interaction diagrams for drug discovery. J Chem Inf.model 51(10):2778–2786

Article  CAS  PubMed  Google Scholar 

Lear S, Cobb SL (2016) Pep-Calc. com: a set of web utilities for the calculation of peptide and peptoid properties and automatic mass spectral peak assignment. J Comput-Aided Mol Des 30:271–277

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lian Z, Bai J, Hu X, Lü A, Sun J, Guo Y, Song Y (2020) Detection and characterization of Aeromonas salmonicida subsp. salmonicida infection in crucian carp Carassius auratus. Vet Res Commun 44(2):61–72

Article  PubMed  Google Scholar 

Lulijwa R, Rupia EJ, Alfaro AC (2020) Antibiotic use in aquaculture, policies and regulation, health and environmental risks: a review of the top 15 major producers. Rev Aquac 12:640–663

Article  Google Scholar 

Ma Q-Q, Dong N, Shan A-S, Lv Y-F, Li Y-Z, Chen Z-H, Cheng B-J, Li Z-Y (2012) Biochemical property and membrane-peptide interactions of de novo antimicrobial peptides designed by helix-forming units. Amino Acids 43:2527–2536

Article  CAS  PubMed  Google Scholar 

Maisetta G, Di Luca M, Esin S, Florio W, Brancatisano FL, Bottai D, Campa M, Batoni G (2008) Evaluation of the inhibitory effects of human serum components on bactericidal activity of human beta defensin 3. Peptides 29:1–6

Article  CAS  PubMed  Google Scholar 

Mishra NN, Bayer AS, Tran TT, Shamoo Y, Mileykovskaya E, Dowhan W, Guan Z, Arias CA (2012) Daptomycin resistance in enterococci is associated with distinct alterations of cell membrane phospholipid content. PLoS ONE 7:e43958

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mohamed MF, Abdelkhalek A, S

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