Aesif SW, Anathy V, Havermans M, Guala AS, Ckless K, Taatjes DJ, Janssen-Heininger YMW (2009) In situ analysis of protein S-glutathionylation in lung tissue using glutaredoxin-1-catalyzed cysteine derivatization. Am J Pathol 175(1):36–45. https://doi.org/10.2353/ajpath.2009.080736
Article CAS PubMed PubMed Central Google Scholar
Anathy V, Roberson E, Cunniff B, Nolin JD, Hoffman S, Spiess P, Guala AS, Lahue KG, Goldman D, Flemer S, van der Vliet A, Heintz NH, Budd RC, Tew KD, Janssen-Heininger YMW (2012) Oxidative processing of latent Fas in the endoplasmic reticulum controls the strength of apoptosis. Mol Cell Biol 32(17):3464–3478. https://doi.org/10.1128/mcb.00125-12
Article CAS PubMed PubMed Central Google Scholar
Anathy V, Lahue KG, Chapman DG, Chia SB, Casey DT, Aboushousha R, van der Velden JLJ, Elko E, Hoffman SM, McMillan DH, Jones JT, Nolin JD, Abdalla S, Schneider R, Seward DJ, Roberson EC, Liptak MD, Cousins ME, Butnor KJ, Taatjes DJ, Budd RC, Irvin CG, Ho YS, Hakem R, Brown KK, Matsui R, Bachschmid MM, Gomez JL, Kaminski N, van der Vliet A, Janssen-Heininger YMW (2018) Reducing protein oxidation reverses lung fibrosis. Nat Med 24(8):1128–1135. https://doi.org/10.1038/s41591-018-0090-y
Article CAS PubMed PubMed Central Google Scholar
Barreira L, Pesin Y, Schmeling J (1997) On a general concept of multifractality: multifractal spectra for dimensions, entropies, and Lyapunov exponents. Multifractal rigidity. Chaos 7(1):27–38. https://doi.org/10.1063/1.166232
Bechtold B (2016) Violin plots for MATLAB. Github. https://doi.org/10.5281/zenodo.4559847
Borzone G, Moreno R, Urrea R, Meneses M, OyarzÚN M, Lisboa C (2001) Bleomycin-induced chronic lung damage does not resemble human idiopathic pulmonary fibrosis. Am J Respir Crit Care Med 163(7):1648–1653. https://doi.org/10.1164/ajrccm.163.7.2006132
Article CAS PubMed Google Scholar
Brolin H (1965) Invariant sets under iteration of rational functions. Ark Mat 6(2):103–144. https://doi.org/10.1007/bf02591353
Carleson L, Gamelin TW (1993) Complex dynamics. Universitext tracts in mathematics. Springer-Verlag, New York
Casey DT, Bou Jawde S, Herrmann J, Mori V, Mahoney JM, Suki B, Bates JHT (2021) Percolation of collagen stress in a random network model of the alveolar wall. Sci Rep 11(1):16654. https://doi.org/10.1038/s41598-021-95911-w
Article CAS PubMed PubMed Central Google Scholar
Drożdż S, Oświȩcimka P (2015) Detecting and interpreting distortions in hierarchical organization of complex time series. Phys Rev E. https://doi.org/10.1103/PhysRevE.91.030902
Drożdż S, Kwapień J, Oświecimka P, Rak R (2009) Quantitative features of multifractal subtleties in time series. EPL. 88(6):60003. https://doi.org/10.1209/0295-5075/88/60003
Dunn OJ (1964) Multiple comparisons using rank sums. Technometrics. 6(3):241. https://doi.org/10.1080/00401706.1964.10490181
Fatou P (1917) Sur les substitutions rationnelles. C R Acad Sci 164–165(806–808):992–995
Hénon M (1976) A two-dimensional mapping with a strange attractor. Commun Math Phys 50(1):69–77. https://doi.org/10.1007/bf01608556
Jones MG, Andriotis OG, Roberts JJ, Lunn K, Tear VJ, Cao L, Ask K, Smart DE, Bonfanti A, Johnson P, Alzetani A, Conforti F, Doherty R, Lai CY, Johnson B, Bourdakos KN, Fletcher SV, Marshall BG, Jogai S, Brereton CJ, Chee SJ, Ottensmeier CH, Sime P, Gauldie J, Kolb M, Mahajan S, Fabre A, Bhaskar A, Jarolimek W, Richeldi L, O’Reilly KM, Monk PD, Thurner PJ, Davies DE (2018) Nanoscale dysregulation of collagen structure-function disrupts mechano-homeostasis and mediates pulmonary fibrosis. eLife. https://doi.org/10.7554/eLife.36354
Article PubMed PubMed Central Google Scholar
Julia G (1918) Mémoire sur l’iteration des fonctions rationnelles. J Math Pures Appl 8:47–245
Junqueira LC, Cossermelli W, Brentani R (1978) Differential staining of collagens type I, II and III by sirius red and polarization microscopy. Arch Histol Jpn 41(3):267–274. https://doi.org/10.1679/aohc1950.41.267
Article CAS PubMed Google Scholar
Junqueira LC, Bignolas G, Brentani RR (1979a) Picrosirius staining plus polarization microscopy, a specific method for collagen detection in tissue sections. Histochem J 11(4):447–455. https://doi.org/10.1007/BF01002772
Article CAS PubMed Google Scholar
Junqueira LC, Bignolas G, Brentani RR (1979b) A simple and sensitive method for the quantitative estimation of collagen. Anal Biochem 94(1):96–99. https://doi.org/10.1016/0003-2697(79)90795-4
Article CAS PubMed Google Scholar
Karperien A (2013) Fraclac for imagej.
Ketipearachchi KW, Tatsumi J (2015) Local fractal dimensions and multifractal analysis of the root system of legumes. Plant Prod Sci 3(3):289–295. https://doi.org/10.1626/pps.3.289
Kliment CR, Englert JM, Crum LP, Oury TD (2011) A novel method for accurate collagen and biochemical assessment of pulmonary tissue utilizing one animal. Int J Clin Exp Pathol 4(4):349–355
PubMed PubMed Central Google Scholar
Kramer CY (1956) Extension of multiple range tests to group means with unequal numbers of replications. Biometrics. 12(3):307. https://doi.org/10.2307/3001469
Kruskal WH, Wallis WA (1952) Use of ranks in one-criterion variance analysis. J Am Stat Assoc 47(260):583–621. https://doi.org/10.1080/01621459.1952.10483441
Landini G, Murray PI, Misson GP (1995) Local connected fractal dimensions and lacunarity analyses of 60 degrees fluorescein angiograms. Invest Ophthalmol Vis Sci 36(13):2749–2755
Laurent GJ (1986) Lung collagen: more than scaffolding. Thorax 41(6):418–428. https://doi.org/10.1136/thx.41.6.418
Article CAS PubMed PubMed Central Google Scholar
Ley B, Collard HR, King TE Jr (2011) Clinical course and prediction of survival in idiopathic pulmonary fibrosis. Am J Respir Crit Care Med 183(4):431–440. https://doi.org/10.1164/rccm.201006-0894CI
MacKenna DA, Omens JH, McCulloch AD, Covell JW (1994) Contribution of collagen matrix to passive left ventricular mechanics in isolated rat hearts. Am J Physiol 266(3 Pt 2):H1007–1018. https://doi.org/10.1152/ajpheart.1994.266.3.H1007
Article CAS PubMed Google Scholar
Mandelbrot BB (1967) How long is the coast of Britain? Statistical self-similarity and fractional dimension. Science 156(3775):636–638. https://doi.org/10.1126/science.156.3775.636
Article CAS PubMed Google Scholar
Mandelbrot BB (1983) The fractal geometry of nature. Updated and augmented edition. Freeman, New York
Martinez FJ, Collard HR, Pardo A, Raghu G, Richeldi L, Selman M, Swigris JJ, Taniguchi H, Wells AU (2017) Idiopathic pulmonary fibrosis. Nat Rev Dis Primers 3:17074. https://doi.org/10.1038/nrdp.2017.74
Moal F, Chappard D, Wang J, Vuillemin E, Michalak-Provost S, Rousselet MC, Oberti F, Cales P (2002) Fractal dimension can distinguish models and pharmacologic changes in liver fibrosis in rats. Hepatology 36(4 Pt 1):840–849. https://doi.org/10.1053/jhep.2002.35533
Neuman RE, Logan MA (1950) The determination of hydroxyproline. J Biol Chem 184(1):299–306
Article CAS PubMed Google Scholar
Onursal C, Dick E, Angelidis I, Schiller HB, Staab-Weijnitz CA (2021) Collagen biosynthesis, processing, and maturation in lung ageing. Front Med (Lausanne). https://doi.org/10.3389/fmed.2021.593874
Pentland AP (1984) Fractal-based description of natural scenes. IEEE Trans Pattern Anal Mach Intell. PAMI-6(6):661–674. https://doi.org/10.1109/tpami.1984.4767591
Posadas AND, Giménez D, Bittelli M, Vaz CMP, Flury M (2001) Multifractal characterization of soil particle-size distributions. Soil Sci Soc Am J 65(5):1361–1367. https://doi.org/10.2136/sssaj2001.6551361x
Raghu G, Remy-Jardin M, Myers JL, Richeldi L, Ryerson CJ, Lederer DJ, Behr J, Cottin V, Danoff SK, Morell F, Flaherty KR, Wells A, Martinez FJ, Azuma A, Bice TJ, Bouros D, Brown KK, Collard HR, Duggal A, Galvin L, Inoue Y, Jenkins RG, Johkoh T, Kazerooni EA, Kitaichi M, Knight SL, Mansour G, Nicholson AG, Pipavath SNJ, Buendia-Roldan I, Selman M, Travis WD, Walsh S, Wilson KC, American Thoracic Society ERSJRS, Latin American Thoracic Society (2018) Diagnosis of idiopathic pulmonary fibrosis an official ATS/ERS/JRS/ALAT clinical practice guideline. Am J Respir Crit Care Med 198(5):e44–e68. https://doi.org/10.1164/rccm.201807-1255ST
Reljin I, Reljin B, Pavlovic I, Rakocevic I (2000) Multifractal analysis of gray-scale images. Paper presented at the 2000 10th Mediterranean Electrotechnical Conference. Information Technology and Electrotechnology for the Mediterranean Countries. Proceedings. MeleCon 2000 (Cat. No.00CH37099),
Rich L, Wittaker P (2005) Collagen and picrosirius red staining : a polarized light assessment of fibrillar hue and spatial distribution. Braz J Morphol Sci 22:97–104
Rodriguez LH, Vargas PF, Raff U, Lynch DA, Rojas GM, Moxley DM, Newell JD (1995) Automated discrimination and quantification of idiopathic pulmonary fibrosis from normal lung parenchyma using generalized fractal dimensions in high-resolution computed tomography images. Acad Radiol 2(1):10–18. https://doi.org/10.1016/s1076-6332(05)80240-5
Article CAS PubMed Google Scholar
Sarkar N, Chaudhuri BB (1992) An efficient approach to estimate fractal dimension of textural images. Pattern Recognit 25(9):1035–1041. https://doi.org/10.1016/0031-3203(92)90066-r
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