Aboul-Maaty NA-F, Oraby HA-S (2019) Extraction of high-quality genomic DNA from different plant orders applying a modified CTAB-based method. Bull Natl Res Cent 43:25. https://doi.org/10.1186/s42269-019-0066-1

Article  Google Scholar 

Adamski NM, Borrill P, Brinton J, Harrington SA, Marchal C, Bentley AR, Bovill WD, Cattivelli L, Cockram J, Contreras-Moreira B (2020) A roadmap for gene functional characterisation in crops with large genomes: lessons from polyploid wheat. Elife 9:e55646

Article  PubMed  PubMed Central  Google Scholar 

Athiyannan N, Aouini L, Wang Y, Krattinger SG (2022) Unconventional R proteins in the botanical tribe Triticeae. Essays Biochem 66:561–569

Article  CAS  PubMed  Google Scholar 

Baillo EH, Kimotho RN, Zhang Z, Xu P (2019) Transcription factors associated with abiotic and biotic stress tolerance and their potential for crops improvement. Genes 10:771. https://doi.org/10.3390/genes10100771

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bhandawat A, Sharma H, Pundir N, Madhawan A, Roy J (2020) Genome-wide identification and characterization of novel non-coding RNA-derived SSRs in wheat. Mol Biol Rep 47:6111–6125. https://doi.org/10.1007/s11033-020-05687-x

Article  CAS  PubMed  Google Scholar 

Biswas MK, Nath UK, Howlader J, Bagchi M, Natarajan S, Kayum MA, Kim H-T, Park J-I, Kang J-G, Nou I-S (2018) Exploration and exploitation of novel SSR markers for candidate transcription factor genes in Lilium species. Genes 9:97

Article  PubMed  PubMed Central  Google Scholar 

Chao J, Li Z, Sun Y, Aluko OO, Wu X, Wang Q, Liu G (2021) MG2C: a user-friendly online tool for drawing genetic maps. Mol Hortic 1:16. https://doi.org/10.1186/s43897-021-00020-x

Article  CAS  PubMed  PubMed Central  Google Scholar 

Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philos Trans R Soc Lond B Biol Sci 363:557–572. https://doi.org/10.1098/rstb.2007.2170

Article  CAS  PubMed  Google Scholar 

Diao P, Chen C, Zhang Y, Meng Q, Lv W, Ma N (2020) The role of NAC transcription factor in plant cold response. Plant Signal Behav 15:1785668

Article  PubMed  PubMed Central  Google Scholar 

Earl DA, VonHoldt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359–361

Article  Google Scholar 

El Baidouri M, Murat F, Veyssiere M, Molinier M, Flores R, Burlot L, Alaux M, Quesneville H, Pont C, Salse J (2017) Reconciling the evolutionary origin of bread wheat (Triticum aestivum). New Phytol 213:1477–1486

Article  PubMed  Google Scholar 

Ellegren H (2000) Heterogeneous mutation processes in human microsatellite DNA sequences. Nat Genet 24:400–402. https://doi.org/10.1038/74249

Article  CAS  PubMed  Google Scholar 

Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x

Article  CAS  PubMed  Google Scholar 

Fandade V, Singh P, Singh D, Sharma H, Thakur G, Saini S, Kumar P, Mantri S, Bishnoi OP, Roy J (2024) Genome-wide identification of microsatellites for mapping, genetic diversity and cross-transferability in wheat (Triticumspp). Gene 896:148039. https://doi.org/10.1016/j.gene.2023.148039

Article  CAS  PubMed  Google Scholar 

Feng H, Duan X, Zhang Q, Li X, Wang B, Huang L, Wang X, Kang Z (2014) The target gene of tae-miR164, a novel NAC transcription factor from the NAM subfamily, negatively regulates resistance of wheat to stripe rust. Mol Plant Pathol 15:284–296. https://doi.org/10.1111/mpp.12089

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fujimori S, Washio T, Higo K, Ohtomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S (2003) A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription. FEBS Lett 554:17–22

Article  CAS  PubMed  Google Scholar 

Gong D, Wu B, Qin H, Fu D, Guo S, Wang B, Li B (2022) Functional characterization of a farnesyl diphosphate synthase from Dendrobium nobile Lindl. AMB Express 12:129

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guerin C, Roche J, Allard V, Ravel C, Mouzeyar S, Bouzidi MF (2019) Genome-wide analysis, expansion and expression of the NAC family under drought and heat stresses in bread wheat (T. aestivum L.). PLoS One 14:e0213390

Article  PubMed  PubMed Central  Google Scholar 

Gupta A, Singh C, Kumar V, Tyagi BS, Tiwari V, Chatrath R, Singh GP (2018) Wheat varieties notified in India since 1965. ICAR-Indian Institute of Wheat & Barley Research

Gupta K, Balyan S, Edwards J, Isaac P, Korzun V, Röder M, Gautier M-F, Joudrier P, Schlatter R, Dubcovsky J, De La Pena C, Khairallah M, Penner G, Hayden J, Sharp P, Keller B, Wang C, Hardouin P, Jack P, Leroy P (2002) Genetic mapping of 66 new microsatellite (SSR) loci in bread wheat. TAG Theor. Appl Genet Theor Angew Genet 105:413–422. https://doi.org/10.1007/s00122-002-0865-9

Article  CAS  Google Scholar 

Han B, Wang C, Tang Z, Ren Y, Li Y, Zhang D, Dong Y, Zhao X (2015) Genome-wide analysis of microsatellite markers based on sequenced database in Chinese spring wheat (Triticum aestivum L.). PLoS ONE 10:e0141540. https://doi.org/10.1371/journal.pone.0141540

Article  CAS  PubMed  PubMed Central  Google Scholar 

He X, Qu B, Li W, Zhao X, Teng W, Ma W, Ren Y, Li B, Li Z, Tong Y (2015) The nitrate-inducible NAC transcription factor TaNAC2-5A controls nitrate response and increases wheat yield. Plant Physiol 169:1991–2005

CAS  PubMed  PubMed Central  Google Scholar 

Huang Q, Wang Y, Li B, Chang J, Chen M, Li K, Yang G, He G (2015) TaNAC29, a NAC transcription factor from wheat, enhances salt and drought tolerance in transgenic Arabidopsis. BMC Plant Biol 15:268. https://doi.org/10.1186/s12870-015-0644-9

Article  CAS  PubMed  PubMed Central  Google Scholar 

Huang Y, Li T, Xu Z-S, Wang F, Xiong A-S (2017) Six NAC transcription factors involved in response to TYLCV infection in resistant and susceptible tomato cultivars. Plant Physiol Biochem 120:61–74

Article  CAS  PubMed  Google Scholar 

Jaiswal S, Sheoran S, Arora V, Angadi UB, Iquebal MA, Raghav N, Kumar D (2017) Putative microsatellite DNA marker-based wheat genomic resource for varietal improvement and management. Front Plant Sci 8:2009. https://doi.org/10.3389/fpls.2017.02009

Article  PubMed  PubMed Central  Google Scholar 

Johansson E, Lan Y, Olalekan O, Kuktaite R, Chawade A, Rahmatov M (2024) Alien introgression to wheat for food security: functional and nutritional quality for novel products under climate change. Front Nutr 11:1393357. https://doi.org/10.3389/fnut.2024.1393357

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol 16:1099–1106. https://doi.org/10.1111/j.1365-294X.2007.03089.x

Article  PubMed  Google Scholar 

Kihara H (1944) Discovery of the DD-analyser, one of the ancestors of Triticum vulgare. Agric Hort 19:13–14

Google Scholar 

Kim HJ, Nam HG, Lim PO (2016) Regulatory network of NAC transcription factors in leaf senescence. Curr Opin Plant Biol 33:48–56

Article  PubMed  Google Scholar 

Lan Thi Hoang X, Du Nhi NH, Binh Anh Thu N, Phuong Thao N, Phan Tran L-S (2017) Transcription factors and their roles in signal transduction in plants under abiotic stresses. Curr Genomics 18:483–497.

Lawson MJ, Zhang L (2008) Housekeeping and tissue-specific genes differ in simple sequence repeats in the 5′-UTR region. Gene 407:54–62. https://doi.org/10.1016/j.gene.2007.09.017

Article  CAS  PubMed