Anonymous. Annual Report 2017–18, ICAR-National Bureau of Fish Genetic Resources, Lucknow-226002 (UP), India. 2018

Asakawa S, Abe I, Kudoh Y, Kishi N, Wang Y, Kubota R, Kudoh J, Kawasaki K, Minoshima S, Shimizu N. Human BAC library: construction and rapid screening. Gene. 1997;191:69–79.

Article  PubMed  Google Scholar 

Baisvar VS, Kushwaha B, Kumar R, Murali S, Pandey M, Singh M. Chromosome analysis of walking catfish, Clarias magur (teleostei, siluriformes, clariidae), using staining, FISH with 18S, 5S and BAC probes. J Appl Ichthyol. 2021;37(4):563–71.

Article  Google Scholar 

Beier S, Thiel T, Münch T, Scholz U, Mascher M. MISA-web: a web server for microsatellite prediction. Bioinformatics. 2017;33:2583–5.

Article  PubMed  PubMed Central  Google Scholar 

Buitkamp J, Kollers S, Durstewitz G, Fries R, Welzel K, Schäfer K, Kellermann A, Lehrach H. Construction and characterization of a gridded cattle BAC library. Anim Genet. 2000;31:347–51.

Article  PubMed  Google Scholar 

Cai L, Taylor JF, Wing RA, Gallagher DS, Woo SS, Davis SK. Construction and characterization of a bovine bacterial artificial chromosome library. Genomics. 1995;29:413–25.

Article  PubMed  Google Scholar 

Cai WW, Chen R, Gibbs RA, Bradley A. A clone-array pooled shotgun strategy for sequencing large genomes. Genome Res. 2001;11:1619–23.

Article  PubMed  Google Scholar 

Damas J, O’Connor R, Farré M, et al. Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set. Genome Res. 2017;27(5):875–84. https://doi.org/10.1101/gr.213660.116.

Article  PubMed  PubMed Central  Google Scholar 

do Vale Martins L, de Oliveira Bustamante F, da Silva Oliveira AR, et al. BAC- and oligo-FISH mapping reveals chromosome evolution among Vigna angularis, V. unguiculata, and Phaseolus vulgaris. Chromosoma. 2021;130:133–47.

Article  PubMed  Google Scholar 

Ellinghaus D, Kurtz S, Willhoeft U. LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics. 2008;9:18.

Article  PubMed  PubMed Central  Google Scholar 

Fuentes F, Reynolds E, Lewellis SW, Venkiteswaran G, Knaut HA. Plasmid set for efficient bacterial artificial chromosome (BAC) transgenesis in zebrafish. G3 (Bethesda). 2016;6:829–34.

Article  PubMed  Google Scholar 

Fuji K, Koyama T, Kai W, Kubota S, Yoshida K, Ozaki A, Aoki JY, Kawabata Y, Araki K, Tsuzaki T, Okamoto N. Construction of a high-coverage bacterial artificial chromosome library and comprehensive genetic linkage map of yellowtail Seriola quinqueradiata. BMC Res Notes. 2014;7(1):200.

Article  PubMed  PubMed Central  Google Scholar 

Genet C, Dehais P, Palti Y, Gao G, Gavory F, Wincker P, Quillet E, Boussaha M. Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes. BMC Genomics. 2011;12:314.

Article  PubMed  PubMed Central  Google Scholar 

Heintz N. BAC to the future: the use of BAC transgenic mice for neuroscience research. Nat Rev Neuro Sci. 2001;2:861–70.

Article  Google Scholar 

Huang X, Madan A. CAP3: a DNA sequence assembly program. Genome Res. 1999;9:868–77.

Article  PubMed  PubMed Central  Google Scholar 

Jackson SA, Dong F, Jiang J. Digital mapping of bacterial artificial chromosomes by fluorescence in situ hybridization. Plant J. 1999;17:581–7.

Article  PubMed  Google Scholar 

Jiang J. Fluorescence in situ hybridization in plants: recent developments and future applications. Chromosome Res. 2019;27:153–65.

Article  PubMed  Google Scholar 

Katagiri T, Asakawa S, Minagawa S, Shimizu N, Hirono I, Aoki T. Construction and characterization of BAC libraries for three fish species; rainbow trout, carp and tilapia. Anim Genet. 2001;32:200–4.

Article  PubMed  Google Scholar 

Khorasani MZ, Hennig S, Imre G, Asakawa S, Palczewski S, Berger A, Hori H, Naruse K, Mitani H, Shima A, Lehrach H. A first generation physical map of the medaka genome in BACs essential for positional cloning and clone-by-clone based genomic sequencing. Mech Dev. 2004;121:903–13.

Article  PubMed  Google Scholar 

Kumar R, Baisvar VS, Kushwaha B, Murali S, Singh VK. Improved protocols for BAC insert DNA isolation, BAC end sequencing and FISH for construction of BAC based physical map of genes on the chromosomes. Mol Biol Rep. 2020;47:2405–13.

Article  PubMed  Google Scholar 

Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35:1547–9.

Article  PubMed  PubMed Central  Google Scholar 

Kushwaha B, Pandey M, Das P, Joshi CG, Nagpure NS, Kumar R, Kumar D, et al. The genome of walking catfish Clarias magur (Hamilton, 1822) unveils the genetic basis that may have facilitated the development of environmental and terrestrial adaptation systems in air-breathing catfishes. DNA Res. 2021. https://doi.org/10.1093/dnares/dsaa031.

Article  PubMed  PubMed Central  Google Scholar 

Kwan J, Baumgartner A, Lu CM, Wang M, Weier JF, Zitzelsberger HF, Weier HG. BAC-FISH assays delineate complex chromosomal rearrangements in a case of post-Chernobyl childhood thyroid cancer. Folia Histochem Cytobiol. 2009;47:135–42.

Article  PubMed  PubMed Central  Google Scholar 

Laugsch M, Rostovskaya M, Velychk S, Richter C, Zimmer A, Klink B, Schröck E, Haase M, Neumann K, Thieme S, Roesler J, Brenner S, Anastassiadis K. Functional restoration of gp91phox-oxidase activity by BAC transgenesis and gene targeting in X-linked chronic granulomatous disease iPSCs. Mol Ther. 2016;24:812–22.

Article  PubMed  Google Scholar 

Li Y, Uhm T, Ren C, Wu C, Santos TS, Lee MK, Yan B, Santos F, Zhang A, Scheuring C, Sanchez A, Millen AC, Nguyen HT, Kou H, Liu D, Zhang HB. A plant-transformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence. Genome. 2007;50:278–88.

Article  PubMed  Google Scholar 

Li Y, Xu P, Zhao Z, Wang J, Zhang Y, Sun XW. Construction and characterization of the BAC library for common carp Cyprinus carpio L. and establishment of microsynteny with zebrafish Danio rerio. Mar Biotechnol. 2011;13:706–12.

Article  Google Scholar 

Liu S, Liu Y, Zhang X, Zhou W, Yang L, Zhang X, Wu D, Cai S, Gao C, Lang T, Ding L. Construction of a pufferfish bacterial artificial chromosome library. Zhongguo Yi Xue Ke Xue Yuan Xue Bao Acta Academiae Medicinae Sinicae. 1998;20:161–6.

PubMed  Google Scholar 

Ma KY, Yu SH, Du YX, et al. Construction of a genomic bacterial artificial chromosome (BAC) library for the prawn Macrobrachium rosenbergii and initial analysis of ZW chromosome-derived BAC inserts. Mar Biotechnol. 2019;21:206–16.

Article  Google Scholar 

Marra M, Kucaba TA, Dietrich NL, Green ED, Brownstein B, Wilson RK, McDonald KM, Hillier LW, McPherson JD, Waterston RH. High throughput fingerprint analysis of large-insert clones. Genome Res. 1997;7:1072–84.

Article  PubMed  PubMed Central  Google Scholar 

Monaco AP, Larin Z. YACs, BACs, PACs and MACs: artificial chromosomes as research tools. Trends Biotechnol. 1994;12:280–6.

Article  PubMed  Google Scholar 

Okura VK, de Souza RS, de Siqueira Tada SF, Arruda P. BAC-pool sequencing and assembly of 19 Mb of the complex sugarcane genome. Front Plant Sci. 2016;7:342. https://doi.org/10.3389/fpls.2016.00342.

Article  PubMed  PubMed Central  Google Scholar 

Palti Y, Gahr SA, Hansen JD, Rexroad CE III. Characterization of a new BAC library for rainbow trout: evidence for multi-locus duplication. Anim Genet. 2004;35:130–3.

Article  PubMed  Google Scholar 

Peterson DG, Lapitan NL, Stack SM. Localization of single-and low-copy sequences on tomato synaptonemal complex spreads using fluorescence in situ hybridization (FISH). Genetics. 1999;152:427–39.

Article  PubMed  PubMed Central  Google Scholar 

Peterson DG, Tomkins JP, Frisch DA, Wing RA, Paterson AH. Construction of plant bacterial artificial chromosome (BAC) libraries: an illustrated guide. J Agril Genomics. 2000;5:1–100.

Google Scholar 

Quiniou SM, Katagiri T, Miller NW, Wilson M, Wolters WR, Waldbieser GC. Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus. Genet Sel Evol. 2003;35:673.