Barcoding and genetic variation in species (Crassiclitellata: ) with first report of (Michaelsen 1907) from Mizoram, North Eastern Region (NER) of India

Agrawal D, Agrawal OP. A study of the biodiversity of earthworms in and around Gwalior, Madhya Pradesh. In: Singh SM, editor. Earthworm Ecology and Environment. Lucknow: India International Book Distributing Company Publication; 2009. p. 15–24.

Google Scholar 

Allendorf FW. Genetics and the conservation of natural populations: allozymes to genomes. Mol Ecol. 2017;26:420–30.

Article  PubMed  CAS  Google Scholar 

Amos W, Harwood J. Factors affecting levels of genetic diversity in natural populations Philosophical Transactions of the Royal Society of London. Series B: Biol Sci. 1998;353(1366):177–86.

CAS  Google Scholar 

Anderson FE, Williams BW, Horn KM, Erséus C, Halanych KM, Santos SR, James SW. Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms. BMC Evol Biol. 2017;17:1–18.

Google Scholar 

Asshoff R, Scheu S, Eisenhauer N. Different earthworm ecological groups interactively impact seedling establishment. Eur J Soil Biol. 2010;46(5):330–4.

Article  Google Scholar 

Bandelt HJ, Forster P, Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 1999;16(1):37–48.

Article  PubMed  CAS  Google Scholar 

Banerjee DR, Raghunathan C, Rizvi AN, and Sengupta J. Animal Discoveries 2023: New Species and New Records. The Director, Zoological Survey of India. 2024. M-Block, New Alipore, Kolkata – 700 053, West Bengal, India.1–356.

Bhattacharyya PN, Baruah C, Jha DK, Sharma DK. Potential application of microbial resources in North East India: future prospects and challenges. An Int J Environ Biodiver. 2011;2(3):12–8.

Google Scholar 

Bouché MB. The establishment of earthworm communities. In: Earthworm Ecology: From Darwin to Vermiculture. Dordrecht, Springer Netherlands; 1983. pp. 431–448.

Chang CH, Rougerie R, Chen JH. Identifying earthworms through DNA barcodes: Pitfalls and promise. Pedobiologia. 2009;52(3):171–80.

Article  CAS  Google Scholar 

Charlesworth B, Charlesworth D. Population genetics from 1966 to 2016. Heredity. 2017;118(1):2–9.

Article  PubMed  CAS  Google Scholar 

Chaudhuri PS, Dey A, Bhattacharjee G, Nath S. Earthworm diversity in Tripura-a present status. Sci Cult. 2012;78(7–8):317–21.

Google Scholar 

Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: More models, new heuristics and parallel computing. Nat Methods. 2012;9(8):772–772.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Doorenweerd C, San Jose M, Barr N, Leblanc L, Rubinoff D. Highly variable COI haplotype diversity between three species of invasive pest fruit fly reflects remarkably incongruent demographic histories. Sci Rep. 2020;10(1):1–10.

Article  Google Scholar 

Edgar RC. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform. 2004;5(1):1–19. https://doi.org/10.1186/1471-2105-5-113.

Article  CAS  Google Scholar 

Edler D, Klein J, Antonelli A, Silvestro D. raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML. Method Ecol Evol. 2021;12(2):373–7. https://doi.org/10.1111/2041-210X.13512.

Article  Google Scholar 

Edwards CA, Arancon NQ. The role of earthworms in organic matter and nutrient cycles. In: Edwards CA, Arancon NQ, editors. Biology and Ecology of Earthworms. New York: Springer US; 2022. p. 233–74. https://doi.org/10.1007/978-0-387-74943-3_8.

Chapter  Google Scholar 

Fernández R, Almodóvar A, Novo M, Simancas B, Díaz DJ, Cosin DDJ. Adding complexity to the complex: new insights into the phylogeny, diversification and origin of parthenogenesis in the Aporrectodea caliginosa species complex (Oligochaeta, Lumbricidae). Molecul Phylogenet Evol. 2012;64(2):368–79. https://doi.org/10.1016/j.ympev.2012.04.011.

Article  Google Scholar 

Frankham R. Challenges and opportunities of genetic approaches to biological conservation. Biol Cons. 2010;143(9):1919–27.

Article  Google Scholar 

Frankham R. Introduction to conservation genetics. Cambridge University Press; 2002.

Fujisawa T, Barraclough TG. Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Syst Biol. 2013;62(5):707–24.

Article  PubMed  PubMed Central  Google Scholar 

Gates GE. Burmese earthworms: an introduction to the systematics and biology of megadrile oligochaetes with special reference to Southeast Asia. Trans Am Philosoph Soc. 1972;62(7):1. https://doi.org/10.2307/1006214.

Article  Google Scholar 

Gates GE. Indian earthworms III The genus Eutyphoeus. Records Zool Surv India. 1938;40(1):39–119.

Article  Google Scholar 

Goodall-Copestake WP, Tarling GA, Murphy EJ. On the comparison of population-level estimates of haplotype and nucleotide diversity: a case study using the gene cox1 in animals. Heredity. 2012;109(1):50–6. https://doi.org/10.1038/hdy.2012.12.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Haokip SL, Singh TB. Comparative studies on the earthworm community structure in the natural mixed and oak plantation sub-tropical forests ecosystem of Imphal, Manipur, India. Int J Ecol Environ Sci. 2017;43(4):319–29.

Google Scholar 

Hebert PD, Cywinska A, Ball SL, deWaard JR. Biological identifications through DNA barcodes. proceedings of the Royal Society of London. Series B Biol Sci. 2003;270:313–21.

Article  CAS  Google Scholar 

Hughes AR, Inouye BD, Johnson MT, Underwood N, Vellend M. Ecological consequences of genetic diversity. Ecol Lett. 2008;11(6):609–23.

Article  PubMed  Google Scholar 

Hutchison DW, Templeton AR. Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution. 1999;53(6):1898–914.

Article  PubMed  Google Scholar 

Ilona JK. Taxonomic and ecological studies on the earthworms (Annelida: Oligochaeta) of West Khasi Hills District. Meghalaya Record Zool Survey India. 2018;118(1):56–74.

Google Scholar 

Ivanova NV, deWaard JR, Hebert PDN. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol Ecol Notes. 2006;6(4):998–1002.

Article  CAS  Google Scholar 

Ivanova NV, Zemlak TS, Hanner RH, Hebert PD. Universal primer cocktails for fish DNA barcoding. Molecul Ecol Notes. 2007;7(4):544–8.

Article  CAS  Google Scholar 

James SW, Porco D, Decaëns T, Richard B, Rougerie R, Erséus C. DNA barcoding reveals cryptic diversity in Lumbricus terrestris L., 1758 (Clitellata): resurrection of L. herculeus (Savigny, 1826). PLoS ONE. 2010;12: e15629. https://doi.org/10.1371/journal.pone.0015629.

Article  CAS  Google Scholar 

Julka JM. Fauna of India. India: Zoological Survey of India. S.I. Publication Calcutta; 1988.

Google Scholar 

Julka JM. Studies on the earthworms collected during the Daphabum expedition in Arunachal Pradesh. India Rec Zool Surv India. 1976;69(1–4):229–39.

Google Scholar 

Julka JM. Taxonomic studies on the earthworms collected during the susbansiri expedition in Arunachal Pradesh. India Zool Surv India. 1981;26:1–53.

Google Scholar 

Kamboj N, Kumar A, Kamboj V, Bisht A, Pandey N, Bharti M. Role of earthworm biodiversity in soil fertility and crop productivity improvement. In: Biological Diversity: Current Status and Conservation Policies. Agro Environ Media - Agriculture and Ennvironmental Science Academy, Haridwar, India; 2021. p. 230–41. https://doi.org/10.26832/aesa-2021-bdcp-015.

Chapter  Google Scholar 

Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–9.

Article  PubMed  PubMed Central  CAS  Google Scholar 

Lalthanzara H, Lalfelpuii R, Zothansanga C, Vabeiryureilai M, Kumar NS, Gurusubramanium G. Oligochaete taxonomy–The rise of earthworm DNA barcode in India. Sci Vision. 2018;18(1):1–10.

Article  Google Scholar 

Lalthanzara H, Zothansanga C, Lalchhanhima M, Kumar NS, Ngukir J, Kimsing A, Vabeiryureilai M. Diversity and New Records of Earthworms in Arunachal Pradesh. Northeast India J Environ Biol. 2020;41(4):874–83.

Google Scholar 

Lavelle P, Spain AV. Soil ecology. Dordrecht: Springer Netherlands; 2001. https://doi.org/10.1007/978-94-017-5279-4.

Book  Google Scholar 

Letunic I, Bork P. Interactive Tree of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics. 2007;23(1):127–8.

Article  PubMed  CAS  Google Scholar 

Lin Z, Zhen Z, Ren L, Yang J, Luo C, Zhong L, Hu H, Liang Y, Li Y, Zhang D. Effects of two ecological earthworm species on atrazine degradation performance and bacterial community structure in red soil. Chemosphere. 2018;196:467–75.

Article  PubMed  CAS  Google Scholar 

Lone AR, Thakur SS, Tiwari N, Sokefun OB, Yadav S. Disentangling earthworm taxonomic stumblin

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