Capra E.J., Laub M.T. 2012. Evolution of two-component signal transduction systems. Annu. Rev. Microbiol. 66 (1), 325–347. https://doi.org/10.1146/annurev-micro-092611-150039

Article  CAS  PubMed  PubMed Central  Google Scholar 

Appleby J.L., Parkinson J.S., Bourret R.B. 1996. Signal transduction via the multi-step phosphorelay: Not necessarily a road less traveled. Cell. 86 (6), 845–848. https://doi.org/10.1016/s0092-8674(00)80158-0

Article  CAS  PubMed  Google Scholar 

Wuichet K., Cantwell B.J., Zhulin I.B. 2010. Evolution and phyletic distribution of two-component signal transduction systems. Curr. Opin. Microbiol. 13 (2), 219–225. https://doi.org/10.1016/j.mib.2009.12.011

Article  CAS  PubMed  PubMed Central  Google Scholar 

Papon N., Stock A.M. 2019. What do archaeal and eukaryotic histidine kinases sense? F1000Research. 8, F1000-Faculty. https://doi.org/10.12688/f1000research.20094.1

Kabbara S., Hérivaux A., Dugé de Bernonville T., et al. 2019. Diversity and evolution of sensor histidine kinases in eukaryotes. Genome Biol. Evol. 11 (1), 86–108. https://doi.org/10.1093/gbe/evy213

Article  CAS  PubMed  Google Scholar 

Kim S., Hirakawa H., Muta S., Kuhara S. 2010. Identification and classification of a two-component system based on domain structures in bacteria and differences in domain structure between gram-positive and gram-negative bacteria. Biosci. Biotechnol. Biochem. 74 (4), 716–720. https://doi.org/10.1271/bbb.90746

Article  CAS  PubMed  Google Scholar 

Leliaert F., Smith D.R., Moreau H., Herron M.D., Verbruggen H., Delwiche C.F., De Clerck O. 2012. Phylogeny and molecular evolution of the green algae. Crit. Rev. Plant Sci. 31 (1), 1–46. https://doi.org/10.1080/07352689.2011.615705

Article  Google Scholar 

Peers G., Truong T.B., Ostendorf E., Busch A., Elrad D., Grossman A.R., Hippler M., Niyogi K.K. 2009. An ancient light-harvesting protein is critical for the regulation of algal photosynthesis. Nature. 462 (7272), 518–521. https://doi.org/10.1038/nature08587

Article  CAS  PubMed  Google Scholar 

Herron M.D., Hackett J.D., Aylward F.O., Michod R.E. 2009. Triassic origin and early radiation of multicellular volvocine algae. Proc. Natl. Acad. Sci. USA. 106 (9), 3254–3258. https://doi.org/10.1073/pnas.0811205106

Article  PubMed  PubMed Central  Google Scholar 

Tafreshi H.A., Shariati M. 2009. Dunaliella biotechnology: Methods and applications. J. Appl. Microbiol. 107 (1), 14–35. https://doi.org/10.1111/j.1365-2672.2009.04153.x

Article  CAS  Google Scholar 

Fang L., Leliaert F., Zhang Z., Penny D., Zhong B. 2017. Evolution of the Chlorophyta: Insights from chloroplast phylogenomic analyses. J. Syst. Evol. 55 (4), 322–332. https://doi.org/10.1111/jse.12248

Article  Google Scholar 

Sushmita K., Kaushik M.S., Sizova I., Kateriya S. 2020. Photoactivated protein kinases in green algae and their functional role in abiotic stress. In: Protein kinases and stress signaling in plants. Hoboken: John Wiley & Sons Ltd., p. 37–85. https://doi.org/10.1002/9781119541578.ch3

Maresca J.A., Miller K.J., Keffer J.L., Sabanayagam C.R., Campbell B.J. 2018. Distribution and diversity of rhodopsin-producing microbes in the chesapeake bay. App-l. Environ. Microbiol. 84 (13), e00137-18. https://doi.org/10.1128/AEM.00137-18

Article  CAS  Google Scholar 

Tian Y., Gao S., Von Der Heyde E.L., Hallmann A., Nagel G. 2018. Two-component cyclase opsins of green algae are ATP-dependent and light-inhibited guanylyl cyclases. BMC Biol. 16 (1), 144. https://doi.org/10.1186/s12915-018-0613-5

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhou Y., Ding M., Nagel G., Konrad K.R., Gao S. 2021. Advances and prospects of rhodopsin-based optogenetics in plant research. Plant Physiol. 187 (2), 572–589. https://doi.org/10.1093/plphys/kiab338

Article  CAS  PubMed  PubMed Central  Google Scholar 

Awasthi M., Sushmita K., Kaushik M.S., Ranjan P., Kateriya S. 2020. Novel modular rhodopsins from green algae hold great potential for cellular optogenetic modulation across the biological model systems. Life. 10 (11), 259. https://doi.org/10.3390/life10110259

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bi A., Cui J., Ma Y.-P., Olshevskaya E., Pu M., Dizhoor A.M., Pan Z.-H. 2006. Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration. Neuron. 50 (1), 23–33. https://doi.org/10.1016/j.neuron.2006.02.026

Article  CAS  PubMed  PubMed Central  Google Scholar 

Camporeze B., Manica B.A., Bonafé G.A., Ferreira J.J.C., Diniz A.L., de Oliveira C.T.P., Mathias Junior L.R., de Aguiar P.H.P., Ortega M.M. 2018. Optogenetics: The new molecular approach to control functions of neural cells in epilepsy, depression and tumors of the central nervous system. Am. J. Cancer Res. 8 (10), 1900–1918. https://doi.org/10.13140/RG.2.2.36690.71365

Article  CAS  PubMed  PubMed Central  Google Scholar 

Emiliani V., Entcheva E., Hedrich R., Hegemann P., et al. 2022. Optogenetics for light control of biological systems. Nat. Rev. Methods Primers. 2 (1), 55. https://doi.org/10.1038/s43586-022-00136-4

Article  CAS  PubMed  PubMed Central  Google Scholar 

Tian Y., Gao S., Yang S., Nagel G. 2018. A novel rhodopsin phosphodiesterase from Salpingoeca rosetta shows light-enhanced substrate affinity. Biochem. J. 475 (6), 1121–1128. https://doi.org/10.1042/BCJ20180010

Article  CAS  PubMed  Google Scholar 

Coudert E., Gehant S., De Castro E., Pozzato M., Baratin D., Neto T., Sigrist C.J.A., Redaschi N., Bridge A. 2023. Annotation of biologically relevant ligands in UniProtKB using ChEBI. Bioinformatics. 39 (1), btac793. https://doi.org/10.1093/bioinformatics/btac793

Jones P., Binns D., Chang H.Y., Fraser M., et al. 2014. InterProScan 5: Genome-scale protein function classification. Bioinformatics. 30 (9), 1236–1240. https://doi.org/10.1093/bioinformatics/btu031

Article  CAS  PubMed  PubMed Central  Google Scholar 

Spearman C. 1904. The proof and measurement of association between two things. Am. J. Psychol. 15 (1), 72. https://doi.org/10.2307/1412159

Article  Google Scholar 

Luck M., Hegemann P. 2017. The two parallel photocycles of the Chlamydomonas sensory photoreceptor histidine kinase rhodopsin 1. J. Plant Physiol. 217, 77–84. https://doi.org/10.1016/j.jplph.2017.07.008

Article  CAS  PubMed  Google Scholar 

Gao R., Stock A.M. 2009. Biological insights from structures of two-component proteins. Annu. Rev. Microbiol. 63 (1), 133–54. https://doi.org/10.1146/annurev.micro.091208.073214

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lassak J., Bubendorfer S., Thormann K.M. 2013. Domain analysis of arcs, the hybrid sensor kinase of the Shewanella oneidensis mr-1 arc two-component system, reveals functional differentiation of its two receiver domains. J. Bacteriol. 195 (3), 482–492. https://doi.org/10.1128/JB.01715-12

Article  CAS  PubMed  PubMed Central  Google Scholar