Martinez JL (2008) Antibiotics and antibiotic resistance genes in natural environments. Science 321(5887):365–367. https://doi.org/10.1126/science.1159483

Article  CAS  PubMed  Google Scholar 

Sapkota A, Sapkota AR, Kucharski M, Burke J, McKenzie S, Walker P, Lawrence R (2008) Aquaculture practices and potential human health risks: current knowledge and future priorities. Environ Int 34(8):1215–1226. https://doi.org/10.1016/j.envint.2008.04.009

Article  PubMed  Google Scholar 

Khedkar S, Smyshlyaev G, Letunic I, Maistrenko OM, Coelho LP, Orakov A, Forslund SK, Hildebrand F, Luetge M, Schmidt TSB, Barabas O, Bork P (2022) Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes. Nucleic Acids Res 50(6):3155–3168. https://doi.org/10.1093/nar/gkac163

Article  CAS  PubMed  PubMed Central  Google Scholar 

Piotrowska M, Popowska M (2015) Insight into the mobilome of Aeromonas strains. Front Microbiol 6:494. https://doi.org/10.3389/fmicb.2015.00494

Article  PubMed  PubMed Central  Google Scholar 

Shintani M, Vestergaard G, Milakovic M, Kublik S, Smalla K, Schloter M, Udikovic-Kolic N (2023) Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies. Environ Microbiol 25(12):3035–3051. https://doi.org/10.1111/1462-2920.16481

Article  CAS  PubMed  Google Scholar 

Aslam B, Khurshid M, Arshad MI, Muzammil S, Rasool M, Yasmeen N, Shah T, Chaudhry TH, Rasool MH, Shahid A, Xia XS, Baloch Z (2021) Antibiotic resistance: one health one world outlook. Front Cell Infect Mi 11:771510. https://doi.org/10.3389/fcimb.2021.771510

Article  CAS  Google Scholar 

Monsalve ER, Quiroga E (2022) Farmed shrimp aquaculture in coastal wetlands of Latin America—a review of environmental issues. Mar Pollut Bull 183:113956. https://doi.org/10.1016/j.marpolbul.2022.113956

Article  CAS  PubMed  Google Scholar 

Venier C, Menegon S, Possingham HP, Gissi E, Zanella A, Depellegrin D, Sarretta A, Barbanti A, McGowan J (2021) Multi-objective zoning for aquaculture and biodiversity. Sci Total Environ 785:146997. https://doi.org/10.1016/j.scitotenv.2021.146997

Article  CAS  PubMed  Google Scholar 

Carvalho IT, Santos L (2016) Antibiotics in the aquatic environments: a review of the European scenario. Environ Int 94:736–757. https://doi.org/10.1016/j.envint.2016.06.025

Article  PubMed  Google Scholar 

Cutting SM (2011) Bacillus probiotics. Food Microbiol 28(2):214–220. https://doi.org/10.1016/j.fm.2010.03.007

Article  PubMed  Google Scholar 

Kuebutornye FKA, Abarike ED, Lu Y (2019) A review on the application of Bacillus as probiotics in aquaculture. Fish Shellfish Immun 87:820–828. https://doi.org/10.1016/j.fsi.2019.02.010

Article  CAS  Google Scholar 

Lee NK, Kim WS, Paik HD (2019) Bacillus strains as human probiotics: characterization, safety, microbiome, and probiotic carrier. Food Sci Biotechnol 28(5):1297–1305. https://doi.org/10.1007/s10068-019-00691-9

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bagheri T, Hedayati SA, Yavari V, Alizade M, Farzanfar A (2008) Growth, survival and gut microbial load of rainbow trout (Onchorhynchus mykiss) fry given diet supplemented with probiotic during the two months of first feeding. Turk J Fish Aquat Sc 8(1):43–48

Google Scholar 

Zokaeifar H, Balcázar JL, Saad CR, Kamarudin MS, Sijam K, Arshad A, Nejat N (2012) Effects of Bacillus subtilis on the growth performance, digestive enzymes, immune gene expression and disease resistance of white shrimp. Litopenaeus vannamei Fish Shellfish Immun 33(4):683–689. https://doi.org/10.1016/j.fsi.2012.05.027

Article  CAS  Google Scholar 

Teuber M, Schwarz F, Perreten V (2003) Molecular structure and evolution of the conjugative multiresistance plasmid pRE25 of Enterococcus faecalis isolated from a raw-fermented sausage. Int J Food Microbiol 88(2–3):325–329. https://doi.org/10.1016/S0168-1605(03)00195-8

Article  CAS  PubMed  Google Scholar 

None (2012) Guidance on the assessment of bacterial susceptibility to antimicrobials of human and veterinary importance. EFSA J. https://doi.org/10.2903/j.efsa.2012.2740

Article  Google Scholar 

Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular Evolutionary Genetics Analysis Version 70 for Bigger Datasets. Mol Biol Evol 33(7):1870–1874. https://doi.org/10.1093/molbev/msw054

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wei C, Luo K, Wang M, Li Y, Pan M, Xie Y, Qin G, Liu Y, Li L, Liu Q, Tian X (2022) Evaluation of potential probiotic properties of a strain of Lactobacillus plantarum for shrimp farming: from beneficial functions to safety assessment. Front Microbiol 13:854131. https://doi.org/10.3389/fmicb.2022.854131

Article  PubMed  PubMed Central  Google Scholar 

None (2010) Ministry of Health China. List of strains that can be used for food. no. 65. beijing: ministry of health of the people’s republic of china.

Chen CQ, Zheng L, Zhou JL, Zhao H (2017) Persistence and risk of antibiotic residues and antibiotic resistance genes in major mariculture sites in Southeast China. Sci Total Environ 580:1175–1184. https://doi.org/10.1016/j.scitotenv.2016.12.075

Article  CAS  PubMed  Google Scholar 

Grabert R, Boopathy R, Nathaniel R, LaFleur G (2018) Effect of tetracycline on ammonia and carbon removal by the facultative bacteria in the anaerobic digester of a sewage treatment plant. Bioresour Technol 267:265–270. https://doi.org/10.1016/j.biortech.2018.07.061

Article  CAS  PubMed  Google Scholar 

Di J, Chu Z, Zhang S, Huang J, Du H, Wei Q (2019) Evaluation of the potential probiotic Bacillus subtilis isolated from two ancient sturgeons on growth performance, serum immunity and disease resistance of Acipenser dabryanus. Fish Shellfish Immun 93:711–719. https://doi.org/10.1016/j.fsi.2019.08.020

Article  CAS  Google Scholar 

Guo X, Chen DD, Peng KS, Cui ZW, Zhang XJ, Li S, Zhang YA (2016) Identification and characterization of Bacillus subtilis from grass carp (Ctenopharynodon idellus) for use as probiotic additives in aquatic feed. Fish Shellfish Immun 52:74–84. https://doi.org/10.1016/j.fsi.2016.03.017

Article  CAS  Google Scholar 

Cai Y, Yuan W, Wang S, Guo W, Li A, Wu Y, Chen X, Ren Z, Zhou Y (2019) In vitro screening of putative probiotics and their dual beneficial effects: to white shrimp (Litopenaeus vannamei) postlarvae and to the rearing water. Aquaculture 498:61–71. https://doi.org/10.1016/j.aquaculture.2018.08.024

Article  Google Scholar 

Lee S, Lee J, Jin Y-I, Jeong J-C, Chang YH, Lee Y, Jeong Y, Kim M (2017) Probiotic characteristics of Bacillus strains isolated from Korean traditional soy sauce. LWT-Food Sci Technol 79:518–524. https://doi.org/10.1016/j.lwt.2016.08.040

Article  CAS  Google Scholar 

Zhou Y, Yuan X, Liang XF, Fang L, Li J, Guo X, Bai X, He S (2013) Enhancement of growth and intestinal flora in grass carp: the effect of exogenous cellulase. Aquaculture 416–417:1–7. https://doi.org/10.1016/j.aquaculture.2013.08.023

Article  CAS  Google Scholar 

Won KM, Park SI (2008) Pathogenicity of Vibrio harveyi to cultured marine fishes in Korea. Aquaculture 285(1):8–13. https://doi.org/10.1016/j.aquaculture.2008.08.013

Article  Google Scholar 

Pham TTH, Rossi P, Dinh HDK, Pham NTA, Tran PA, Ho TTKM, Dinh QT, De Alencastro LF (2018) Analysis of antibiotic multi-resistant bacteria and resistance genes in the effluent of an intensive shrimp farm (Long An, Vietnam). J Environ Manage 214(MAY15):149. https://doi.org/10.1016/j.jenvman.2018.02.089

Article  CAS  PubMed  Google Scholar 

Cheng AAC, Lin BHL, Shiu BYL, Tyan CYC, Liu BCH (2017) Isolation and characterization of antimicrobial peptides derived from Bacillus subtilis E20-fermented soybean meal and its use for preventing Vibrio infection in shrimp aquaculture. Fish Shellfish Immun 67:270–279. https://doi.org/10.1016/j.fsi.2017.06.006

Article  CAS  Google Scholar 

Yi Y, Zhang Z, Zhao F, Li H, Yu L, Zha J, Wang G (2018) Probiotic potential of Bacillus velezensis JW: antimicrobial activity against fish pathogenic bacteria and immune enhancement effects on Carassius auratus. Fish Shellfish Immun 78:322–330. https://doi.org/10.1016/j.fsi.2018.04.055

Article  CAS