Abraham A, Pedregosa F, Eickenberg M, Gervais P, Mueller A, Kossaifi J, Gramfort A, Thirion B, Varoquaux G (2014) Machine learning for neuroimaging with scikit-learn. Front Neuroinform 8:14
Article PubMed PubMed Central Google Scholar
Amunts K, Hawrylycz MJ, Van Essen DC, Van Horn JD, Harel N, Poline J-B, De Martino F, Bjaalie JG, Dehaene-Lambertz G, Dehaene S, Valdes-Sosa P, Thirion B, Zilles K, Hill SL, Abrams MB, Tass PA, Vanduffel W, Evans AC, Eickhoff SB (2014) Interoperable atlases of the human brain. Neuroimage 99:525–532
Article CAS PubMed Google Scholar
Amunts K, Mohlberg H, Bludau S, Zilles K (2020) Julich-Brain: a 3D probabilistic atlas of the human brain’s cytoarchitecture. Science 369(6506):988–992
Article CAS PubMed Google Scholar
Andersson JL, Skare S, Ashburner J (2003) How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. Neuroimage 20(2):870–888
Badillo S, Vincent T, Ciuciu P (2013) Group-level impacts of within- and between-subject hemodynamic variability in fMRI. Neuroimage 82:433–448
Behzadi Y, Restom K, Liau J, Liu TT (2007) A component based noise correction method (compcor) for BOLD and perfusion based fMRI. Neuroimage 37(1):90–101
Bijsterbosch JD, Woolrich MW, Glasser MF, Robinson EC, Beckmann CF, Van Essen DC, Harrison SJ, Smith SM (2018) The relationship between spatial configuration and functional connectivity of brain regions. ELife 7:e32992
Article PubMed PubMed Central Google Scholar
Bohland JW, Bokil H, Allen CB, Mitra PP (2009) The brain atlas concordance problem: quantitative comparison of anatomical parcellations. PLoS One 4(9):e7200
Article PubMed PubMed Central Google Scholar
Braga RM, Buckner RL (2017) Parallel interdigitated distributed networks within the individual estimated by intrinsic functional connectivity. Neuron 95(2):457-471.e5
Article CAS PubMed PubMed Central Google Scholar
Bryce NV, Flournoy JC, Guassi Moreira JF, Rosen ML, Sambook KA, Mair P, McLaughlin KA (2021) Brain parcellation selection: an overlooked decision point with meaningful effects on individual differences in resting-state functional connectivity. Neuroimage 243(118487):118487
Campbell KL, Shafto MA, Wright P, Tsvetanov KA, Geerligs L, Cusack R, Tyler LK, Brayne C, Bullmore E, Calder A, Cusack R, Dalgleish T, Duncan J, Henson R, Matthews F, Marslen-Wilson W, Rowe J, Shafto M, Campbell K, Cheung T, Davis S, Geerligs L, Kievit R, McCarrey A, Price D, Taylor J, Tsvetanov K, Williams N, Bates L, Emery T, Erzinçlioglu S, Gadie A, Gerbase S, Georgieva S, Hanley C, Parkin B, Troy D, Allen J, Amery G, Amunts L, Barcroft A, Castle A, Dias C, Dowrick J, Fair M, Fisher H, Goulding A, Grewal A, Hale G, Hilton A, Johnson F, Johnston P, Kavanagh-Williamson T, Kwasniewska M, McMinn A, Norman K, Penrose J, Roby F, Rowland D, Sargeant J, Squire M, Stevens B, Stoddart A, Stone C, Thompson T, Yazlik O, Dixon M, Barnes D, Hillman J, Mitchell J, Villis L, Tyler LK (2015) Idiosyncratic responding during movie-watching predicted by age differences in attentional control. Neurobiol Aging 36(11):3045–3055
Article PubMed PubMed Central Google Scholar
Chen P-HC, Chen J, Yeshurun Y, Hasson U, Haxby J, Ramadge PJ (2015) A reduced-dimension fmri shared response model. In: Cortes C, Lawrence N, Lee D, Sugiyama M, Garnett R (eds) Advances in neural information processing systems, vol 28. Curran Associates Inc, New York
Dadi K, Rahim M, Abraham A, Chyzhyk D, Milham M, Thirion B, Varoquaux G, Initiative ADN (2019) Benchmarking functional connectome-based predictive models for resting-state fMRI. Neuroimage 192:115–134
Dadi K, Varoquaux G, Machlouzarides-Shalit A, Gorgolewski KJ, Wassermann D, Thirion B, Mensch A (2020) Fine-grain atlases of functional modes for fMRI analysis. Neuroimage 221(117126):117126
Dohmatob E, Richard H, Pinho AL, Thirion B (2021) Brain topography beyond parcellations: local gradients of functional maps. Neuroimage 229:117706
Fischl B, Sereno MI, Tootell RB, Dale AM (1999) High-resolution intersubject averaging and a coordinate system for the cortical surface. Hum Brain Mapp 8(4):272–284
Article CAS PubMed PubMed Central Google Scholar
Friston K, Frith C, Frackowiak R, Turner R (1995) Characterizing dynamic brain responses with fMRI: a multivariate approach. Neuroimage 2(2):166–172
Article CAS PubMed Google Scholar
Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Andersson J, Beckmann CF, Jenkinson M, Smith SM, van Essen DC (2016) A multi-modal parcellation of human cerebral cortex. Nature 536(7615):171–178
Article CAS PubMed PubMed Central Google Scholar
Gordon EM, Laumann TO, Gilmore AW, Newbold DJ, Greene DJ, Berg JJ, Ortega M, Hoyt-Drazen C, Gratton C, Sun H, Hampton JM, Coalson RS, Nguyen AL, McDermott KB, Shimony JS, Snyder AZ, Schlaggar BL, Petersen SE, Nelson SM, Dosenbach NU (2017) Precision functional mapping of individual human brains. Neuron 95(4):791-807.e7
Article CAS PubMed PubMed Central Google Scholar
Gratton C, Laumann TO, Nielsen AN, Greene DJ, Gordon EM, Gilmore AW, Nelson SM, Coalson RS, Snyder AZ, Schlaggar BL, Dosenbach NU, Petersen SE (2018) Functional brain networks are dominated by stable group and individual factors, not cognitive or daily variation. Neuron 98(2):439-452.e5
Article CAS PubMed PubMed Central Google Scholar
Greene DJ, Marek S, Gordon EM, Siegel JS, Gratton C, Laumann TO, Gilmore AW, Berg JJ, Nguyen AL, Dierker D, Van AN, Ortega M, Newbold DJ, Hampton JM, Nielsen AN, McDermott KB, Roland JL, Norris SA, Nelson SM, Snyder AZ, Schlaggar BL, Petersen SE, Dosenbach NU (2020) Integrative and network-specific connectivity of the basal ganglia and thalamus defined in individuals. Neuron 105(4):742-758.e6
Article CAS PubMed Google Scholar
Hale JT, Campanelli L, Li J, Bhattasali S, Pallier C, Brennan JR (2022) Neurocomputational models of language processing. Annu Rev Linguist 8(1):null
Harrison SJ, Bijsterbosch JD, Segerdahl AR, Fitzgibbon SP, Farahibozorg S-R, Duff EP, Smith SM, Woolrich MW (2020) Modelling subject variability in the spatial and temporal characteristics of functional modes. Neuroimage 222(117226):117226
Haxby JV, Guntupalli JS, Connolly AC, Halchenko YO, Conroy BR, Gobbini MI, Hanke M, Ramadge PJ (2011) A common, high-dimensional model of the representational space in human ventral temporal cortex. Neuron 72(2):404–416
Article CAS PubMed PubMed Central Google Scholar
Kasties V, Karnath HO, Sperber C (2021) Strategies for feature extraction from structural brain imaging in lesion-deficit modelling. Hum Brain Mapp 42(16):5409–5422
Article PubMed PubMed Central Google Scholar
Kong R, Li J, Orban C, Sabuncu MR, Liu H, Schaefer A, Sun N, Zuo XN, Holmes AJ, Eickhoff SB, Yeo BTT (2019) Spatial topography of individual-specific cortical networks predicts human cognition, personality, and emotion. Cereb Cortex 29(6):2533–2551
Kong R, Tan YR, Wulan N, Ooi LQR, Farahibozorg S-R, Harrison S, Bijsterbosch JD, Bernhardt BC, Eickhoff S, Thomas Yeo BT (2023) Comparison between gradients and parcellations for functional connectivity prediction of behavior. Neuroimage 273(120044):120044
Lawrence RM, Bridgeford EW, Myers PE, Arvapalli GC, Ramachandran SC, Pisner DA, Frank PF, Lemmer AD, Nikolaidis A, Vogelstein JT (2021) Standardizing human brain parcellations. Sci Data 8(1):78
Article PubMed PubMed Central Google Scholar
Manning CD, Raghavan P, Schütze H (2008) Introduction to information retrieval. Cambridge University Press, Cambridge
Mantini D, Hasson U, Betti V, Perrucci MG, Romani GL, Corbetta M, Orban GA, Vanduffel W (2012) Interspecies activity correlations reveal functional correspondence between monkey and human brain areas. Nat Methods 9(3):277–282
Article CAS PubMed PubMed Central Google Scholar
Mensch A, Mairal J, Thirion B, Varoquaux G (2021) Extracting representations of cognition across neuroimaging studies improves brain decoding. PLoS Comput Biol 17(5):e1008795
Article CAS PubMed PubMed Central Google Scholar
Menuet R, Meudec R, Dockès J, Varoquaux G, Thirion B (2022) Comprehensive decoding mental processes from web repositories of functional brain images. Sci Rep 12(1):7050
Article CAS PubMed PubMed Central Google Scholar
Nastase SA, Goldstein A, Hasson U (2020) Keep it real: rethinking the primacy of experimental control in cognitive neuroscience. Neuroimage 222(117254):117254
Nickerson LD, Smith SM, Öngür D, Beckmann CF (2017) Using dual regression to investigate network shape and amplitude in functional connectivity analyses. Front Neurosci 11:115
Article PubMed PubMed Central Google Scholar
Nishimoto S, Vu A, Naselaris T, Benjamini Y, Yu B, Gallant J (2011) Reconstructing visual experiences from brain activity evoked by natural movies. Curr Biol 21:1641–6
Comments (0)