Agrios GN (2005) Plant pathology, 5th edn. Elsevier, San Diego
Alavi M, Miller T, Erlandson K, Schneider R, Belas R (2001) Bacterial community associated with Pfiesteria-like dinoflagellate cultures. Environ Microbiol 3(6):380–396. https://doi.org/10.1046/j.1462-2920.2001.00207.x
Article CAS PubMed Google Scholar
Andersen RA, Brylinski M, Aihara Y, Hess WR, Shiga Y, Tsiokos C, Johnson JG (2018) Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial opsins. Proc Natl Acad Sci. https://doi.org/10.1073/pnas.1803841115
Article PubMed PubMed Central Google Scholar
Andrade-Piedra JL, Cáceres P, Pumisacho M, Forbes GA, COSUDE ASpeDylC (2008) Humans: the neglected corner of the disease tetrahedron—developing a training guide for resource-poor farmers to control potato late blight. Acta Hortic 834(834):111–122. https://doi.org/10.17660/ActaHortic.2009.834.11
Bell W, Mitchell R (1972) Chemotactic and growth responses of marine bacteria to algal extracellular products. Biol Bull 143(2):265–277. https://doi.org/10.2307/1540052
Ben X (2007) Diseases and control of Porphyra yezoensis conchocelis cultivation. J Aquac 28(1):43–44. https://doi.org/10.3969/j.issn.1004-2091.2007.01.022
Buchfink B, Xie C, Huson DH (2015) Fast and sensitive protein alignment using DIAMOND. Nat Methods 12(1):59–60. https://doi.org/10.1038/nmeth.3176
Article CAS PubMed Google Scholar
Chen H, Zheng L, Lin W, Yan X (2004) Product monitoring and quantitation of oligosaccharides composition in agar hydrolysates by precolumn labeling HPLC. Talanta 64(3):773–777. https://doi.org/10.1016/j.talanta.2004.04.002
Article CAS PubMed Google Scholar
Chen H, Jian Q, Luo Q, Zhu Z, Yang R, Yan X (2016) Application of oligoagars as elicitors for field aquaculture of Pyropia haitanensis. J Appl Phycol 28(3):1783–1791. https://doi.org/10.1007/s10811-015-0734-y
Chen S, Zhou Y, Chen Y, Gu J (2018) fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34(17):i884–i890. https://doi.org/10.1093/bioinformatics/bty560
Article CAS PubMed PubMed Central Google Scholar
Chen H, Chu JS-C, Chen J, Luo Q, Wang H, Lu R, Zhu Z, Yuan G, Yi X, Mao Y, Lu C, Wang Z, Gu D, Jin Z, Zhang C, Weng Z, Li S, Yan X, Yang R (2022) Insights into the ancient adaptation to intertidal environments by red algae based on a genomic and multiomics investigation of Neoporphyra haitanensis. Mol Biol Evol 39(1):msab315. https://doi.org/10.1093/molbev/msab315
Article CAS PubMed Google Scholar
Deng R, Meng S, Chen J, Chen C (2020) Application of EM bacteria in aquaculture. Chin Agric Sci Bull 36(11):142–148
Dixon P (2003) VEGAN, a package of R functions for community ecology. J Veg Sci 14(6):927–930. https://doi.org/10.1111/j.1654-1103.2003.tb02228.x
Dogs M, Wemheuer B, Wolter L, Bergen N, Daniel R, Simon M, Brinkhoff T (2017) Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle. Syst Appl Microbiol 40(6):370–382. https://doi.org/10.1016/j.syapm.2017.05.006
Article CAS PubMed Google Scholar
Du L, Yang R, Luo Q, Yan X, Chen H (2018) Response of free-living conchocelis of Pyropia haitanensis to agaro-oligosaccharides. J Fish China 42(7):1077–1084. https://doi.org/10.11964/jfc.20171010994
Egan S, Harder T, Burke C, Steinberg P, Kjelleberg S, Thomas T (2013) The seaweed holobiont: understanding seaweed–bacteria interactions. FEMS Microbiol Rev 37(3):462–476. https://doi.org/10.1111/1574-6976.12011
Article CAS PubMed Google Scholar
Fan L, Lin M, Zheng Y (2021) Research progress in the application of microbial preparation in aquaculture. Food Ferment Sci Technol 57(1):4
Fu L, Niu B, Zhu Z, Wu S, Li W (2012) CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 28(23):3150–3152. https://doi.org/10.1093/bioinformatics/bts565
Article CAS PubMed PubMed Central Google Scholar
Geng H, Belas R (2010) Molecular mechanisms underlying roseobacter–phytoplankton symbioses. Curr Opin Biotechnol 21(3):332–338. https://doi.org/10.1016/j.copbio.2010.03.013
Article CAS PubMed Google Scholar
Hampton HG, Watson BNJ, Fineran PC (2020) The arms race between bacteria and their phage foes. Nature 577(7790):327–336. https://doi.org/10.1038/s41586-019-1894-8
Article CAS PubMed Google Scholar
Hong J, Xue M, Ning W, Li C, Chen Y, Yu W, Huang X, Liang H, Wen C (2020) Effects of four microbial preparations on water quality and postlarval survival of pacific white shrimp Litopenaeus vannamei. Fish Sci 39(5):316–323. https://doi.org/10.16378/j.cnki.1003-1111.2020.03.003
Karimi Z, Laughinghouse HD, Davis VA, Blersch DM (2021) Substrate properties as controlling parameters in attached algal cultivation. Appl Microbiol Biotechnol 105(5):1823–1835. https://doi.org/10.1007/s00253-021-11127-y
Article CAS PubMed Google Scholar
Keller-Costa T, Lago-Lestón A, Saraiva JP, Toscan R, Silva SG, Gonçalves J, Cox CJ, Kyrpides N, Nunes da Rocha U, Costa R (2021) Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals. Microbiome 9(1):72. https://doi.org/10.1186/s40168-021-01031-y
Article CAS PubMed PubMed Central Google Scholar
Khouadja S, Haddaji N, Hanchi M, Bakhrouf A (2017) Selection of lactic acid bacteria as candidate probiotics for Vibrio parahaemolyticus depuration in pacific oysters (Crassostrea gigas). Aquacult Res 48(4):1885–1894. https://doi.org/10.1111/are.13026
Kumar D, Mishra A, Ali W (2018) Polyamines in algae: physiological role and biotechnological applications. Front Mar Sci. https://doi.org/10.3389/fmars.2018.00155
Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24(5):713–714. https://doi.org/10.1093/bioinformatics/btn025
Article CAS PubMed Google Scholar
Li D, Liu C-M, Luo R, Sadakane K, Lam T-W (2015) MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics 31(10):1674–1676. https://doi.org/10.1093/bioinformatics/btv033
Article CAS PubMed Google Scholar
Li J, Weinberger F, de Nys R, Thomas T, Egan S (2022) A pathway to improve seaweed aquaculture through microbiota manipulation. Trends Biotechnol. https://doi.org/10.1016/j.tibtech.2022.08.003
Liu Q, Xu M, He Y, Tao Z, Yang R, Chen H (2019) Complete genome sequence of Vibrio mediterranei 117-T6, a potentially pathogenic bacterium isolated from the conchocelis of Pyropia spp. Microbiol Resour Announce 8(3):e01569-e1618. https://doi.org/10.1128/MRA.01569-18
Liu Q, Zhi Y, He Y, Ren Z, Chen H, Yang R (2020) Changes in phycospheric and environmental microbes associated with an outbreak of yellow spot disease on Pyropia yezoensis. Aquaculture 529:735651. https://doi.org/10.1016/j.aquaculture.2020.735651
Luo H, Moran Mary A (2014) Evolutionary ecology of the marine Roseobacter clade. Microbiol Mol Biol Rev 78(4):573–587. https://doi.org/10.1128/MMBR.00020-14
Article PubMed PubMed Central Google Scholar
Luo H, Fu Y, Shi J, Xie S, Yang Y (2023) Carbon sink potential and environmental benefits of seaweed: a case study of the seaweed cultivation industry on China coast. Aquaculture 572:739494. https://doi.org/10.1016/j.aquaculture.2023.739494
Ma Y, Li Y, Li D, Xu J (2017) Polyamines in algae: distribution, biosynthesis, metabolism and functions. Front Plant Sci. https://doi.org/10.3389/fpls.2017.00692
Article PubMed PubMed Central Google Scholar
Mao Y, Yang R, Ke L, Chen H, Chen J, Luo Q (2023) Using oligoagar to improve the survival of Neoporphyra haitanensis conchocelis infected by Vibrio mediterranei 117-T6. J Appl Phycol. https://doi.org/10.1007/s10811-023-02918-z
Martin M, Portetelle D, Michel G, Vandenbol M (2014) Microorganisms living on macroalgae: diversity, interactions, and biotechnological applications. Appl Microbiol Biotechnol 98(7):2917–2935. https://doi.org/10.1007/s00253-014-5557-2
Article CAS PubMed Google Scholar
Mcmurdie PJ, Susan H, Michael W (2013) phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8(4):e61217. https://doi.org/10.1371/journal.pone.0061217
Article CAS PubMed PubMed Central Google Scholar
Mcmurdie PJ, Holmes S, Mchardy AC (2014) Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput Biol 10(4):e1003531. https://doi.org/10.1371/journal.pcbi.1003531
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