Taste-responsive neurons in the gustatory cortex (GC) have been shown to encode multiple properties of stimuli, including whether they are palatable or not. Previous studies have suggested that a form of taste-involved learning, conditioned taste aversion (CTA), may alter the cortical representation of taste stimuli in a number of ways. We used miniscopes to image taste responses from a large population of neurons in the gustatory cortex of mice before and after CTA to NaCl, comparing taste responses in control and conditioned mice. Following conditioning, no significant effects on the number of responsive cells, or the magnitude of response to either NaCl or other taste stimuli were found. However, population-level analyses showed that in mice receiving a CTA, the representation of NaCl diverged from other appetitive stimuli in neural space and moved closer to that of aversive Quinine. We also tracked the extinction of the CTA in a subset of animals and showed that as NaCl became less aversive, the neural pattern reverted to match the behavior. These data suggest that the predominant function of the taste representation in GC is palatability; the neuronal response pattern to stimuli at the population level reflects the decision of the animal to consume or not consume the stimulus, regardless of quality or chemical identity.
IntroductionThe gustatory cortical area (GC), located within insular cortex in mammals, plays an important role in taste-related learning and feeding decisions (Oliveira-Maia et al., 2012; Yiannakas and Rosenblum, 2017; Boughter and Fletcher, 2021). While electrophysiological studies with rats and mice show that taste quality and stimulus concentration can be encoded in the activity of GC neurons, much evidence has accrued that ensemble and population activity is also organized relative to the hedonic character of taste stimuli, ultimately reflecting the decision of the animal to consume or not consume (Stapleton et al., 2006; Jezzini et al., 2013; Li et al., 2016; Sadacca et al., 2016; Fletcher et al., 2017; Levitan et al., 2019; Bouaichi and Vincis, 2020; Chen et al., 2021). Recently, we used miniscope imaging of GC in mice to demonstrate that repeated familiarity with taste stimuli resulted in an increase in correlated activity over days among stimuli that were consumed in a similar fashion in lick tests (Staszko et al., 2022). Other forms of taste- or ingestive-based learning have also been shown to modify the cortical representation of taste stimuli, most notably conditioned taste aversion (CTA) learning (Yamamoto et al., 1989; Accolla and Carleton, 2008; Moran and Katz, 2014; Arieli et al., 2022).
CTA learning occurs when neutral or appetitive tastes are temporally associated with illness, with the result that animals will display subsequent aversion to those tastes. A large body of research has characterized potential neural circuits and mechanisms that underlie CTA formation and expression, including evidence for a significant role of GC (Braun et al., 1982; Yamamoto et al., 1995; Grossman et al., 2008; Barki-Harrington et al., 2009; Schier et al., 2014; Lavi et al., 2018; Kayyal et al., 2019; Abe et al., 2020; Yiannakas et al., 2021; Jung et al., 2022; Kolatt Chandran et al., 2023). What is less certain is whether and how CTA affects the neuronal activity of the GC itself, and whether a change in activity following learning directly reflects or predicts aversion of the conditioned taste stimulus (CS). Prior research suggests that the effects of CTA on neural activity in the GC take the form of two conceptually distinct—though potentially synergistic—phenomena: Enhancement of the response to the conditioned stimulus (CS), and/or a shift in the neural representation of the CS reflecting its altered palatability. The former possibility may point to an increase in CS salience (Yasoshima and Yamamoto, 1998; Wilkins and Bernstein, 2006; Lavi et al., 2018). Other studies have reported changes in neuronal representation in the GC that indicate a shifting of the hedonic value of the CS from neutral or appetitive towards aversion (Accolla and Carleton, 2008; Moran and Katz, 2014; Lavi et al., 2018; Arieli et al., 2022).
Describing the neural representations of tastes in terms of palatability is not uncomplicated. While taste stimuli are often described as categorically palatable or unpalatable, the behavioral response of an animal to a given taste stimulus is subject to variability as a function of concentration, mixture, the simultaneous or even expected availability of other taste stimuli, and theanimal’ss physiological state and prior experience. For our purposes, we consider palatability to be equivalent to acceptability; a descriptive rather than predictive phenomenon, determined strictly by the behavioral response of an animal to a given taste stimulus. So a stimulus is palatable to the extent that an animal is willing to consume it. The disconnect between neural imaging or recording and naturalistic consummatory behavior often fails to capture the complexity of taste experience, leaving a gap in our understanding of how the cortical representation of taste is altered following learning. In the current study, we conducted calcium imaging of neurons in GC in freely moving mice via head-mounted fluorescent miniscopes, during licking behavior before and after CTA. This allowed us to observe activity in GC in real time over the course of learning, and to do so with minimal interference in the behavior of the animal.
MethodsAnimalsAdult male (n = 8) and female (n = 7) C57BL/6J mice (The Jackson Laboratory, Bar Harbor, ME) were used for all miniscope experiments. The mean age was 180 days at the start of behavioral testing, with mean body weights of 28.7 g (males) and 22.6 (females). Animals were maintained on a standard 12-h light/dark cycle and were group-housed in standard plastic shoebox cages (28 × 17.5 × 13 cm) with ad libitum chow and water. After lens implantation, mice were moved to individual housing to avoid damage to the lens imaging surface. All procedures were approved by the University of Tennessee Health Science Center Institutional Care and Use Committee.
Surgical procedureMice (mean age 108 days) were anesthetized using isoflurane (4–5% induction, 1–2% maintenance) and secured in a stereotaxic apparatus (David Kopf Instruments). Carprofen (5.0 mg/kg) and dexamethasone (0.2 mg/kg) were administered subcutaneously preceding surgery. The scalp was then depilated and sanitized, an incision was made from Bregma to Lambda, and a craniotomy was performed above gustatory cortex (anterior +1.1 mm, lateral 3.3 mm relative to Bregma) using a dental drill (Osada Inc). A micropipette was lowered into the craniotomy window to a depth of 1.75 mm relative to the brain surface, the tissue was allowed to settle for 10 min, and 500 nL of AAV1. Syn. GCaMP6s. WPRE. SV40 (Addgene) was injected at a speed of 15 ul/s using a Nanoject II (Drummond Scientific). The micropipette was removed 10 min after virus injection, at which point a gradient refractive index (GRIN) lens was implanted. GRIN lenses (4.1 mm long by 1 mm diameter; Inscopix) were stereotaxically implanted into insular cortex (e.g., Figures 1A,B) via the same craniotomy window to a ventral depth of 1.75 mm relative to the brain surface using a custom holder. The lens was first secured using cyanoacrylate glue, and then the entire skull was covered with dental cement (Ortho-Jet, Lang Dental) to seal the surgical area and act as a stable platform for imaging. The surface of the lens was covered with a custom 3D-printed cap, which was glued in place with cyanoacrylate to prevent damage prior to the baseplate procedure. Animals were given antibiotic food (Uniprim, Fisher Scientific) and a daily subcutaneous injection of carprofen/dexamethasone for 5 days following surgery. Animals were then given approximately 6–8 weeks recovery, both to allow for viral expression and to facilitate optimal healing and clearing of the imaging window (Staszko et al., 2022). To attach baseplates, animals were anesthetized with isoflurane and placed back in the stereotaxic apparatus. A custom 3D-printed holder (adapted from ONE Core) mounted to the stereotaxic was used to precisely position a miniscope over the lens. The baseplate was then attached to the headcap using dental cement, along with a custom lightweight metal head bar, affixed with cyanoacrylate.

Calcium imaging procedure and analysis. (A) Representative schematic of 1 mm-diameter GRIN lens placement in GI/DI (granular/dysgranular insular) cortex. (B) Post-imaging fluorescent micrograph of cortical section showing GCaMP6 expression (green); the outline of GRIN lens implantation is discernible. (C) Example of raw calcium fluorescent image in the miniscope field of view. (D) Signal to noise overlay showing the degree of change in fluorescence through a session. (E) Spatial correlation overlay, with white circles indicating positively identified cells. (F) Spatial registration of cells over days, green indicating cells identified on all days. (G) Average number of tracked cells (identified on all days) in control and CTA mice. AI, agranular insular cortex; PC, piriform cortex.
Lickometer acclimation and trainingAll behavioral procedures were conducted using a contact lickometer, which includes a test chamber, a shutter-controlled access port, and the ability to present up to 16 stimulus bottles (Davis MS-160, DiLog Instruments). The basic features and operation of this device have been previously described (St John and Boughter, 2009; Staszko et al., 2022). The number and timing of licks to each stimulus bottle were recorded in the lickometer software and by a custom microcontroller peripheral. Stimuli were presented at room temperature. Mice were acclimated to the lickometer and trained to lick filtered water over the course of 6 days: On day 1, water was removed from the home cage of the mice (all daily fluid intake was delivered in the lickometer for the duration of behavioral testing), and animals were placed in the test chamber for 10 min, with no stimulus presentations. On days 2 and 3, mice were given 10 min of free access to water in the lickometer. On days 4 and 5, animals were given 30 trials of water, with a trial duration of 5 s and an inter-trial-interval (ITI) of 7.5 s. On day 6, animals were again given 30, 5 s trials of water, with an extended ITI of 60 s.
Taste exposure and conditioned taste aversionFollowing training, animals were tested for 2 days with a panel of multiple tastes and water (pretest 1 and 2). Stimuli included 0.5 M sucrose, 0.3 M sodium chloride (NaCl), 0.02 M citric acid, 0.01 M quinine hydrochloride (high QHCl), 0.03 mM quinine hydrochloride (low QHCl), and 0.3 M potassium chloride (KCl). Concentrations were chosen based in part on our previous studies (Fletcher et al., 2017; Staszko et al., 2022). For each test session, the multi-taste panel consisted of 5 s trials of each stimulus, alternating with 5 s trials of water with an ITI of 60 s. The stimuli were presented in pseudorandom order in 2 blocks, constituting a total of 12 stimulus trials and 12 water rinses. On the day following the second taste panel presentation, animals were given access in the lickometer (conditioning session) to either 0.2 M lithium chloride (LiCl; CTA group, N = 8) or 0.2 M NaCl (control group, N = 7). Although these salts have similar orosensory properties to mice, ingestion of LiCl (but not NaCl) causes gastric malaise, which leads to subsequent avoidance of equimolar NaCl (Glatt et al., 2016). Concern over latent inhibitory effects on conditioning (0.3 M NaCl was included in the pre-test stimulus panel) was mitigated by the relatively brief and limited pre-exposure to NaCl (Lubow, 2009).
Access during the conditioning session was limited to a single presentation lasting 20 min or 1,000 licks, whichever elapsed first. In this way, we attempted to minimize potential effects of meal size, as mice tested in this way will commonly consume about 3 times as much NaCl vs. LiCl (Glatt et al., 2016). Following conditioning, mice were given a “rest day” with 20 min free access to water in the Davis Rig. On the following day, mice were tested (post-test) with the same taste panel from days 1–2 to assess the impact of conditioned taste aversion. The sequence of training and testing sessions is visualized in Figure 2A.

Behavioral testing: paradigm and results. (A) Freely-moving mice with head-mounted miniscopes were tested with a short-trial battery of taste stimuli for 2 days (pretest); on conditioning day, they were given a single access period with either 0.2 M NaCl (control group; CON) or 0.2 M LiCl (CTA group). This was followed by a post-test day with the taste battery. (B) Average licks per trial (all mice combined) recorded to each stimulus over the 2 pre-test days. (C) Drinking behavior during conditioning: mean licks of the stimulus in the first minute, mean licks per minute averaged over the 10 min trial, and for each mouse, the time (min) elapsed before reaching 1,000 licks. (D) Mean licks per trial for each stimulus, before (pre-test day 2) and after (post-test) for control and CTA animals, respectively. Inset: NaCl licking in the post-test was reduced for all CTA mice, indicating successful generalization of the aversion. Asterisks (panels C, D) indicate significance in t-tests or post-hoc tests.
Extinction of conditioned taste aversionFollowing the post-test, the testing paradigm was altered so as to facilitate extinction of the conditioned aversion. All mice were given a second post-test day, where they were presented with a modified taste panel in which the first 12 taste presentations were all 0.3 M NaCl. This was followed by a block of randomized taste presentations as in the previous sessions; each taste was presented once in a randomized series interleaved with water trials, for an additional 12 presentations. Given the highly divergent context of the 12 consecutive NaCl presentations relative to the single NaCl trial in the randomized series, these were treated as two different stimuli in analysis: the 12 consecutive trials were classified as “NaCl-Force.” As in the previous phase of the experiment, all stimulus presentations were set to a 5-s duration, with a 60 s ITI. Presenting a series of initial NaCl trials drove high consumption of NaCl during this series, facilitating extinction of the conditioned aversion. This procedure was then repeated on a subset of the CTA mice (N = 4) for an additional 2 days, by which point the consumption of NaCl in the 2nd randomized block had recovered to pre-CTA levels.
Miniscope imagingImaging was conducted using UCLA V4 miniscopes (www.miniscope.org; Cai et al., 2016). Tangling of theminiscope’ss coaxial cable during freely-moving behavior was prevented by a custom-built commutator (ONE Core). Our previous study demonstrated that the presence of the miniscopes themselves did not alter brief-access taste behavior relative to non-miniscope wearing controls (Staszko et al., 2022). All videos were recorded at 30 FPS using the UCLA miniscope acquisition software. This sample rate represents the primary limitation of calcium imaging; presently, the dynamics of fluorescent indicators and sensors result in a sample rate much lower than that offered by electrophysiology. While GCaMP6s is sensitive enough to detect single action potentials (Chen et al., 2013), trains of action potentials can only be quantified relatively rather than by a precise count of individual spikes, a function that remains the province of electrophysiology for the time being. However, the high yield and the ability to follow individual cells over days more than compensated for the reduction in temporal resolution. Simultaneous video recording of animal behavior in the chamber was collected using a webcam (Logitech) mounted above the Davis Rig. Gain, exposure, and LED intensity varied slightly between animals but were held constant across imaging days. All video segments collected in a single session were concatenated in Fiji, and imaging sessions were spatially down-sampled to half of their original area (a factor of 0.71 linearly) and temporally to 10 FPS to increase computational efficiency. Further pre-processing of imaging data, including motion correction and trace extraction, was conducted using the Python (3.6) implementation of CaImAn (Giovannucci et al., 2019). Rigid motion correction was used. Minimum spatial correlation and fluorescence peak-noise-ratio values for constrained non-negative matrix factorization with endoscopes (CNMFe) were determined by individual based on summary images. After running the CNMFe algorithm, outputs were further filtered by applying a minimum signal-to-noise ratio of 15.0, meaning the fluorescence signal had to reach a value of at least 15x the determined “noise” value for a given ROI to be accepted as a component. Accepted and rejected components were evaluated manually, and CNMF threshold values were adjusted if necessary, until false positives and negatives were minimized based on data visualization, on a per-animal basis. Threshold values, once established, were kept constant for all days. Identified components are categorized as active cells in subsequent analyses. Non-deconvolved traces were used for all downstream calcium imaging analyses. Cell spatial footprints were extracted (i.e., Figure 1) and aligned across imaging sessions using the MATLAB (R2020a, Mathworks) implementation of CellReg (Sheintuch et al., 2017). Multiday cell registration was completed based on recommendations of CellReg probabilistic modeling. Alignment matrices were manually evaluated using ROI visualization, and maximal distance shifts were adjusted if necessary to optimize cell tracking.
Further analysis of traces was conducted in R (Version 4.1.2) using custom scripts. Calcium traces were first aligned across days based on CellReg indices. Unless otherwise noted, cells were only included in analysis if they could be identified by CellReg in all experimental sessions. Taste-evoked change in fluorescence (ΔF) values were then calculated on a per-trial basis by subtracting the mean fluorescence evoked 5 s prior to licking from the maximum fluorescence evoked during the 5-s licking period (Fletcher et al., 2017). As fluorescence data extracted from CaImAn has already been scaled by a background fluorescence value, ΔF, rather than ΔF/F, was calculated to describe neuronal responses (Giovannucci et al., 2019). For analyses in which cells are classified as excited or suppressed, significant responses were categorized as having at least a +/−3.0 SD change in fluorescence (ΔF) compared to the 5-s pre-licking baseline period; otherwise, the delta values from all cells were used. Positive and negative delta values were considered in all analyses, excluding Entropy.
Experimental design and analysisAnalysis was conducted on behavioral data, in most cases comparing 7 control with 8 CTA mice, and from the subset of 4 CTA mice undergoing extinction. Parametric statistical analyses (ANOVA or t-tests) were conducted using R or GraphPad Prism. Where appropriate (i.e., in the case of within factors), the Greenhouse–Geisser sphericity correction was applied. Post-hoc comparisons were made with the Bonferroni test. For imaging data, analysis was conducted on 2098 neurons (1,061 cells identified in CTA animals, 1,037 identified in controls; 448 cells retained from the CTA animals used in the extinction phase) recorded across all sessions and mice. We limited analysis to the set of cells identifiable on all days (“tracked cells”) in the interest of understanding effects of learning on cell activity over time. Where multiple presentations of a taste stimulus were recorded in a single session, the responses for each stimulus were averaged, yielding one response value per cell and stimulus on a given day. Responsive cells from all mice were pooled by day. Entropy (H), a common measure of breadth of tuning used in taste recordings, was used to evaluate changes in cell tuning across days (Smith and Travers, 1979; Staszko et al., 2022).
Differences in mean taste-evoked responses were analyzed using one-way ANOVA and unpaired t-tests. Hierarchical clustering of lick counts and calcium responses was conducted using the Lance–Williams dissimilarity update formula with the complete linkage method. To compare changes in taste representations across days, we first performed multidimensional scaling (MDS; using pooled responses from mice) via principal coordinates analysis (Gower, 1966) to render stimuli in taste representational space, with the number of dimensions used in the solution selected via the scree method (Bieber and Smith, 1986). Subsequently, we calculated their proximity in taste space by comparing their Euclidean distances. The Euclidean distance (ED) between two representations for each day was calculated as:
with x and y representing the coordinates of each taste in space, and 1 and 2 indicating coordinates from two different tastes. Changes in the tuning of responses by individual neurons were assessed by first grouping all individual neurons by their strongest response to the 4 basic tastes used in the panel on the 2nd day of pre-conditioning taste presentation (i.e., units responding most strongly were categorized as “Q-Unit,” and units responding most strongly to NaCl were categorized as “N-Unit”), and then the response of the Q-Units and N-Units post-conditioning to NaCl and Quinine were quantified in CTA and control animals. A mixed model ANOVA was used for this comparison (condition × tuning group × stimulus), followed by post-hoc t-tests. Classification and discriminant analysis were conducted in Matlab with optimizable Support Vector Machines (Allwein et al., 2001; Furnkranz, 2002; Escalera et al., 2009, 2010). SVM uses observed predictor variables (in this case, neural responses) to construct an N-dimensional space and attempt to bound that space into predictable sub-regions corresponding to latent properties of the predictors, such that future observations can be compared to the modeled space in order to predict their latent properties. SVM was used for two different sets of analyses; one set used the responses from all stimuli on all days, averaged per day, with accuracies determined using leave-one-out cross-validation. Bootstrapping was also performed (1,000 bootstraps) in order to estimate distributions of predictive accuracy. The purpose of this test was to assess whether the responses recorded from GC could be used to predict various characteristics of the stimuli presented. An additional set of analyses was performed using only the basic taste stimuli averaged per day, in which the SVM models were trained on the responses recorded during the 2 days pre-CTA, and were tested on responses collected following CTA. Here again, bootstrapping was also used to estimate distributions of predictions. This served as an additional indication of whether and how stimulus representations formed pre-CTA may have been altered by CTA.
GRIN Lens placement verificationAt the conclusion of imaging experiments, animals were anesthetized with ketamine/xylazine (100/10 mg/kg IP) and transcardially perfused using 4% paraformaldehyde (PFA). Following perfusion, the brain was further postfixed in PFA for 7 days to improve fixation and delineation of the imaging window. Brains were then removed, cryoprotected, and sectioned in 40 um thick serial sections using a freezing microtome. Sections were mounted on slides and imaged using a Nikon Eclipse 90i fluorescent microscope (Nikon Instruments Inc., Melville, NY, USA) equipped with a digital camera and imaging software. A sample GRIN lens placement is shown in Figure 1A; all placements were plotted on schematic section diagrams. The anterior–posterior range of imaging sites was estimated at 0.75 to 1.5 mm anterior to Bregma, with most (9/15) cases at 1.0–1.1 mm. Although the 1.0 mm diameter of the lens allowed for coverage across most cortical layers, there was some variation among cases depending on factors such as the extent of GCaMP expression or angle of lens implantation. However, it was not feasible to identify the cortical layer in the imaging lens field of view, so no analysis of this spatial parameter was attempted.
ResultsCTA alters licking behaviorPrior to conditioning, all 15 mice received access to the taste panel for 2 days. Mean licks recorded per stimulus (groups combined; separate analyses showed that group assignment was not a significant factor) on the 2 test days prior to conditioning are shown in Figure 2B. Significant effects of both stimulus (F[6, 98] = 44.49, p < 0.0001) and day (F[1, 98] = 23.27, p < 0.0001) were found, as well as a significant stimulus × day interaction (F[6, 98] = 9.85, p < 0.0001, 2-way ANOVA). Essentially, licking of a number of stimuli increased from the first to the second pre-test, including increases for NaCl, KCl, and citric acid (ps < 0.05, Bonferroni tests). These effects likely indicate some degree of attenuation of neophobia (Arthurs et al., 2018) or are reflective of habituation to the stimuli. Still, it was apparent by day 2 that only one stimulus (high QHCl) provoked strong avoidance, with a mean lick count of 4.6 per 5 s trial; all other stimuli were readily consumed, with mean lick counts >21.0.
In the conditioning session, ingestion of LiCl by CTA mice depressed licking relative to the controls, who consumed equimolar NaCl. While both groups avidly and similarly consumed either stimulus in the first minute, the lick rate over the entire trial was higher for control mice drinking NaCl (Figure 2C; t[13] = 2.9, p = 0.012, unpaired t-test). All 7 control mice reached the 1,000 lick limit in 5 min or less, while 5 out of 8 CTA mice did not reach 1,000 licks in the 10-min time frame, indicating cessation of licking during the session. Although we did not quantify illness-related behavior during the test, these data are consistent with previous studies showing that ingestion of LiCl (but not NaCl) causes intake behavior to cease due to gastric malaise (Baird et al., 2005; Glatt et al., 2016).
For behavioral analysis of CTA effects, we focused on the comparison between the second pretest day and the (first) post-conditioning test day. Lick data to the panel of stimuli compared on pre- and post-tests for control and CTA mice are shown in Figure 2D. CTA effects on licking were initially assessed with a 3-way mixed model ANOVA (group × day × stimulus). There was no main effect of either group or day, suggesting that, for the most part, behavior was equivalent across these factors. However, there was a main effect of stimulus (F[2.3, 29.85] = 96.68, p < 0.0001), and all interactions were significant. Based on these results, we conducted a series of two-way (group × day) ANOVAs for each stimulus. For NaCl, there were significant main effects of group (F[1,13] = 17.62, p = 0.001) and day (F[1,13] = 42.59, p < 0.0001) plus a significant interaction (F[1,13] = 33.29, p < 0.0001). Control animals’ licking of NaCl was essentially unchanged pre-post conditioning, but that of the experimental animals dropped precipitously, consistent with a CTA formed to LiCl that strongly generalized to NaCl (p < 0.0001, post-hoc test). The mean number of licks to NaCl in the post-test varied within the CTA group, but it is notable that the lick number decreased from the pre-test value for every individual (Figure 2D). There were no significant group × day interactions for any of the other stimuli.
CTA does not affect the number of taste-responsive cells in GC or response magnitudePost-imaging examination of brains showed that GRIN lenses were located within GC, most commonly in granular or dysgranular insular cortex (GI/DI; example shown in Figures 1A,B). Examples of the imaging lens field of view, along with examples of fluorescence extraction, are shown in Figures 1C–E. We identified a subset of tracked cells that could be detected on all days of the experiment (N = 139.9 ± 16.9 cells per animal; Figures 1F,G); this population of cells was subjected to further analysis.
Based on previous examinations of the effect of CTA in GC (Koh and Bernstein, 2005; Flores et al., 2018; Lavi et al., 2018), we anticipated there may be an increase in the number of neurons in GC responding significantly to the conditioned stimulus (either excited or suppressed by; for our purposes referred to as “perturbe”) following conditioning (pretest day 2 vs. post-test day 1 comparison). However, our analyses did not support this hypothesis. No significant effects on the percent of tracked cells responding to NaCl across group or day (pre vs. post) were found (Figure 3A; 2-way ANOVA). Moreover, expanding this assessment to include all taste stimuli also did not yield significant effects (3-way ANOVA). This lack of significant increase in percentage of responsive cells in the CTA group relative to controls was also true when considering excited and suppressed cells as subgroups (data not shown). Next, we evaluated the hypothesis that effects of CTA might manifest in GC neurons as an increase or change in response magnitude, especially to the conditioned stimulus, rather than a change in number of responsive neurons (e.g., Yamamoto et al., 1989; Moran and Katz, 2014). In terms of magnitude of excitation, we found no significant effect of group or day (or their interaction) on excited responses to NaCl (Figure 3C; 2-way ANOVA). When excited responses to all stimuli were combined, we found no significant effect of group or stimulus, but did measure an effect of day (F[1, 13] = 10.08, p = 0.007, 2-way ANOVA); the pooled excitation magnitude of all animals across stimuli increased significantly from the pretest to the post-test (t[14] = 3.3, p = 0.006, paired t-test). However, the group × day interaction was not significant. Assessment of suppression yielded no significant effects, either to all stimuli, or to NaCl only (Figure 3D; 2-way ANOVAs). Finally, we also tested for an effect of CTA on entropy of neurons to the 4 basic qualities of taste. Mean entropy for all tracked neurons on both pre- and post- days in either group was about 0.5; this intermediate value indicates fairly broad tuning, and is perhaps to be expected when considering such a large number of cells (Figure 3B). However, mean entropies did not change following CTA. A two-way ANOVA (day × condition) yielded no significant main effects of group or day, nor of their interaction.

Basic activity measures pre- and post-CTA, averaged across animals and cells, and compared between experimental groups. (A) Fraction of cells perturbed (i.e., with significant excited or suppressed responses to taste stimuli) before and after conditioning in control (CON) and CTA animals, during trials with NaCl (green and white bars) or with all stimuli combined (black and white bars). Bars indicate mean values (±SEM) calculated across individual mice (circles). (B) Breadth of tuning as measured by mean entropy across all cells, before and after CTA, in control and CTA mice. (C) Average magnitude of significantly excited responses, either to NaCl alone (green and white bars) or averaged across all stimuli (black and white bars), before and after conditioning in control and CTA animals (D) Average magnitude of significantly suppressed responses, either to NaCl alone (green and white bars) or averaged across all stimuli (black and white bars), before and after conditioning in control and CTA mice.
CTA alters population coding of taste stimuliTo assess possible effects of CTA on taste coding, we compared the similarity of population representations of each taste stimulus between control and CTA groups. In taking this approach, we evaluated the hypothesis that NaCl might change its representation in terms of its similarity in neural space to other stimuli following learning (Moran and Katz, 2014; Staszko et al., 2022). The Euclidean distances between taste stimuli across identity and over time in the total neuronal population (data pooled across mice in each group) were calculated. Using the Scree method, we selected a two-dimensional solution to reduce the taste representations to their most prominent features. Because the dimension reduction was necessarily computed independently for each group, direct comparison between them is infeasible. Comparison within groups across days, though, was highly revealing (Figure 4A); we plotted multidimensional scaling (MDS) across 3 days, including both pre-test days and the post-test. In control mice, stimuli that were licked avidly cluster together, and their vectors across dimension 2 travel together in a tight cluster. On the other hand, high-concentration QHCl, which was avoided by mice, travels in the opposite direction, indicating evolving neural dissimilarity. In CTA mice, NaCl diverged from the cluster of appetitive taste stimuli on the post-test day, reflecting a shift in palatability following conditioning. These effects were tested statistically (Figure 4B): In two-tailed paired t-tests, mean distance between NaCl and appetitive taste stimuli was significantly greater post-CTA in the CTA animals (t[4] = 4.12, p = 0.015, paired t-test), but not in control animals. The post-test Euclidean distance (expressed in arbitrary units) between NaCl and high QHCl in the control group was 41.5, whereas in the CTA mice it was 19.7.

Relative taste representation in each experimental group as revealed by multi-dimensional scaling. (A) Plot of the first 2 dimensions extrapolated by multidimensional scaling in control (CON) and CTA animals, showing the relationships among each stimulus within MDS space. (B) Mean Euclidean distance between NaCl and other consumed (accepted) taste stimuli, before and after conditioning, in control and CTA animals. (C) Plots demonstrating the high degree of correspondence between dimension 1 of the MDS and behavioral acceptance of each stimulus (i.e., mean licks) post-conditioning for control and CTA mice. Lines on plots indicate best-fit via simple linear regression of the data. Asterisks (panel B) indicate significance in post-hoc comparisons.
The tight relationship between the neuronal-derived MDS solution and the actual lick behavior, which are of course independently derived, is visualized in Figure 4C: Dimension 1 values and mean lick counts for each stimulus are highly correlated in either group (rs > 0.94; ps < 0.002). Furthermore, for CTA mice, the relationship between these two variables shows that following learning, NaCl has become less appetitive, reflected both in behavior and neural signature. Interestingly, minor effects of CTA on both KCl and citric acid (i.e., they have become slightly less appetitive) are also suggested by this data. This finding, while not immediately apparent in the behavior-only analysis (cf., Figure 2D), is consistent with a number of previous studies showing that a CTA to NaCl will generalize to some extent to some other salt and acid stimuli (e.g., Hill et al., 1990).
CTA alters the tuning of taste responsesIn an attempt to characterize the effects underlying the change in the population coding of taste responses, especially given the lack of impact on the percent of cells activated or the magnitude of excitation, we assessed the impact of CTA on the tuning of individual cells by sorting cells into stimulus-best groupings based on their strongest evoked response pre-conditioning, and then quantifying the responses of Qunine- and NaCl-Best cells post-conditioning (Figure 5). In a three-way ANOVA assessing effects on mean response size by condition (CTA vs. control), group (N-Unit vs. Q-Unit), or stimulus (NaCl vs. Quinine), there were no main effects, which is consistent with the general analysis of response magnitude. However, there were significant interactions of condition and group (F[1, 750] = 8.93, p = 0.003, 2-way ANOVA), and group and stimulus (F[1, 750] = 33.98, p < 0.001, 2-way ANOVA), as well as the three-way interaction of condition, group, and stimulus (F[1, 750] = 19.18, p < 0.001, 3-way ANOVA). In comparing CTA and control animals, there was no significant difference in the response to Quinine in either N-Units (p = 0.20, D = 0.15), or Q-Units (p = 0.25, D = 0.11), but the response to NaCl was significantly different in both N-Units (p = 0.004, D = 0.36), and Q-Units (p < 0.001, D = 0.45). This begins to clarify the impact of CTA on tuning; while there are no changes in response magnitude at the population level, the cells participating in that activity are changing. The population of cells that previously responded to NaCl loses that sensitivity, and the population of cells that previously responded to Quinine acquires an additional sensitivity to the now-aversive NaCl. It is noteworthy that CTA does not impact Quinine behaviorally, and does not seem to particularly impact the tuning of that stimulus either.

Alterations in the tuning of the conditioned stimulus. Tuning of post-conditioning responses to NaCl and quinine of cells categorized as either N-best or Q-best units based on their maximum strength of responding during the pre-conditioning taste panel. In control animals, previously Q-best or N-best units maintain that primacy after CTA conditioning, while in CTA animals, previously Q-best units exhibit a substantial response to NaCl, and previously N-best units exhibit little to no response to NaCl. In contrast, response to quinine is effectively equivalent across conditioning groups.
As an additional measure to corroborate the representational changes measured by MDS, we trained two Support Vector Machine (SVM) classification models, one per experimental group (Figure 6). We used SVM models to discriminate just the stimuli representing the four basic tastes (high QHCl, citric acid, NaCl, and sucrose) based on the activity evoked by those stimuli in the two pre-CTA sessions. We then applied those models to the data recorded on the day immediately following CTA, to assess how changing taste representations would impact the performance of the classifier. As a function of prediction error, models fitted to responses from control and experimental animals performed similarly, with correct classifications at a rate of 49% (Figure 6A) and 45% (Figure 6C), respectively. Both models also substantially outperformed the models fitted with shuffled data, which made correct classifications at a rate of 26% (Figure 6B) and 25% (Figure 6D) (effectively chance). At the level of individual tastes, trials of NaCl in control animals were most likely to be classified correctly as NaCl (40%), while trials of NaCl in CTA animals were only correctly classified at a rate of 13% (Figure 6C). Further, NaCl trials in CTA animals were more likely to be classified as aversive tastes (e.g., Citric Acid and Quinine). Comparing the representation of NaCl recorded post-learning to a model constructed based on the pre-learning taste representations, it seems that the representation of NaCl post-CTA is more similar to the initial representations of the aversive stimuli than the initial representation of NaCl, an effect consistent with the findings of MDS (Figure 4). Interestingly, trials of Citric Acid were misclassified in control animals. These findings fit nicely with the behavioral data, as control animals increased their consumption of Citric Acid to levels similar to the other appetitive tastes following conditioning, and their Citric Acid taste representations remained close to appetitive taste in the MDS plot. This effect is not seen in CTA mice, which appear to show some generalization to Citric Acid behaviorally (Figure 2D) and a greater separation from the appetitive tastes in the MDS plot (Figure 4).
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