Al-Mousawi J, Boskovic A (2022) Transcriptional and epigenetic control of early life cell fate decisions. Curr Opin Oncol 34:148–154

Article  CAS  PubMed  Google Scholar 

Ali A, Tyagi S (2017) Diverse roles of WDR5-RbBP5-ASH2L-DPY30 (WRAD) complex in the functions of the SET1 histone methyltransferase family. J Biosci 42:155–159

Article  CAS  PubMed  Google Scholar 

Allfrey VG, Faulkner R, Mirsky AE (1964) Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis. Proc Natl Acad Sci U S A 51:786–794

Article  CAS  PubMed  PubMed Central  Google Scholar 

Berger SL (2007) The complex Language of chromatin regulation during transcription. Nature 447:407–412

Article  CAS  PubMed  Google Scholar 

Chary P, Natvig DO (1989) Evidence for three differentially regulated catalase genes in neurospora crassa: effects of oxidative stress, heat shock, and development. J Bacteriol 171:2646–2652

Article  CAS  PubMed  PubMed Central  Google Scholar 

Clouaire T, Webb S, Skene P, Illingworth R, Kerr A, Andrews R, Lee JH, Skalnik D, Bird A (2012) Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells. Genes Dev 26:1714–1728

Article  CAS  PubMed  PubMed Central  Google Scholar 

Clouaire T, Webb S, Bird A (2014) Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells. Genome Biol 15:451

PubMed  PubMed Central  Google Scholar 

Collin F (2019) Chemical basis of reactive oxygen species reactivity and involvement in neurodegenerative diseases. Int J Mol Sci 20:2407

Article  PubMed  PubMed Central  Google Scholar 

Cui G, Dong Q, Duan J, Zhang C, Liu X, He Q (2020) NC2 complex is a key factor for the activation of catalase-3 transcription by regulating H2A.Z deposition. Nucleic Acids Res 48:8332–8348

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dehé PM, Dichtl B, Schaft D, Roguev A, Pamblanco M, Lebrun R, Rodríguez-Gil A, Mkandawire M, Landsberg K, Shevchenko A et al (2006) Protein interactions within the Set1 complex and their roles in the regulation of histone 3 lysine 4 methylation. J Biol Chem 281:35404–35412

Article  PubMed  Google Scholar 

Dong Q, Wang Y, Qi S, Gai K, He Q, Wang Y (2018) Histone variant H2A.Z antagonizes the positive effect of the transcriptional activator CPC1 to regulate catalase-3 expression under normal and oxidative stress conditions. Free Radic Biol Med 121:136–148

Article  CAS  PubMed  Google Scholar 

Dou Y, Milne TA, Tackett AJ, Smith ER, Fukuda A, Wysocka J, Allis CD, Chait BT, Hess JL, Roeder RG (2005) Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell 121:873–885

Article  CAS  PubMed  Google Scholar 

Ernst P, Vakoc CR (2012) WRAD: enabler of the SET1-family of H3K4 methyltransferases. Brief Funct Genomics 11:217–226

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guillemette B, Drogaris P, Lin HH, Armstrong H, Hiragami-Hamada K, Imhof A, Bonneil E, Thibault P, Verreault A, Festenstein RJ (2011) H3 lysine 4 is acetylated at active gene promoters and is regulated by H3 lysine 4 methylation. PLoS Genet 7:e1001354

Article  CAS  PubMed  PubMed Central  Google Scholar 

He L, He T, Farrar S, Ji L, Liu T, Ma X (2017) Antioxidants maintain cellular redox homeostasis by elimination of reactive oxygen species. Cell Physiol Biochem 44:532–553

Article  PubMed  Google Scholar 

He L, Duan Z, Yu M, Qi S, Wang Y, Lou H, He Q (2022) HDA-2-Containing complex is required for activation of Catalase-3 expression in neurospora crassa. mBio 13:e0135122

Article  PubMed  Google Scholar 

Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA et al (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39:311–318

Article  CAS  PubMed  Google Scholar 

Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW et al (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459:108–112

Article  CAS  PubMed  PubMed Central  Google Scholar 

Honda BM, Candido PM, Dixon GH (1975) Histone methylation. Its occurrence in different cell types and relation to histone H4 metabolism in developing trout testis. J Biol Chem 250:8686–8689

Article  CAS  PubMed  Google Scholar 

Huang F, Chandrasekharan MB, Chen YC, Bhaskara S, Hiebert SW, Sun ZW (2010) The JmjN domain of Jhd2 is important for its protein stability, and the plant homeodomain (PHD) finger mediates its chromatin association independent of H3K4 methylation. J Biol Chem 285:24548–24561

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jiang H (2020) The complex activities of the SET1/MLL complex core subunits in development and disease. Biochim Biophys Acta Gene Regul Mech 1863:194560

Article  CAS  PubMed  PubMed Central  Google Scholar 

Karmodiya K, Krebs AR, Oulad-Abdelghani M, Kimura H, Tora L (2012) H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells. BMC Genomics 13:424

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lauberth SM, Nakayama T, Wu X, Ferris AL, Tang Z, Hughes SH, Roeder RG (2013) H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation. Cell 152:1021–1036

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lennicke C, Cochemé HM (2021) Redox metabolism: ROS as specific molecular regulators of cell signaling and function. Mol Cell 81:3691–3707

Article  CAS  PubMed  Google Scholar 

Lenstra TL, Benschop JJ, Kim T, Schulze JM, Brabers NA, Margaritis T, van de Pasch LA, van Heesch SA, Brok MO, Groot Koerkamp MJ et al (2011) The specificity and topology of chromatin interaction pathways in yeast. Mol Cell 42:536–549

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ (2006) Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature 442:91–95

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liang G, Klose RJ, Gardner KE, Zhang Y (2007) Yeast Jhd2p is a histone H3 Lys4 trimethyl demethylase. Nat Struct Mol Biol 14:243–245

Article  CAS  PubMed  Google Scholar 

Liu H, Zhang Q, Huang F, Shen S, Altaf M, Wang Y, Liu X, He Q (2025) Transcription factor VIB-1 activates catalase-3 expression by promoting PIC assembly in neurospora crassa. Nucleic Acids Res 53:174

Article  Google Scholar 

Lledías F, Rangel P, Hansberg W (1998) Oxidation of catalase by singlet oxygen. J Biol Chem 273:10630–10637

Article  PubMed  Google Scholar 

Margaritis T, Oreal V, Brabers N, Maestroni L, Vitaliano-Prunier A, Benschop JJ, van Hooff S, van Leenen D, Dargemont C, Géli V et al (2012) Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3’-end antisense transcription. PLoS Genet 8:e1002952

Article  CAS