Abreu PC, Odebrecht C, Gonzalez A (1994) Particulate and dissolved phytoplankton production of the Patos lagoon estuary, Southern Brazil: comparison of methods and influencing factors. J Plankton Res 16(7):737–753. https://doi.org/10.1093/plankt/16.7.737
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. Nat Genet 25:25–29. https://doi.org/10.1038/75556
Article PubMed PubMed Central CAS Google Scholar
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. https://doi.org/10.1186/1471-2164-9-75
Article PubMed PubMed Central CAS Google Scholar
Babicki S, Arndt D, Marcu A, Liang Y, Grant JR, Maciejewski A, Wishart DS (2016) Heatmapper: web-enabled heat mapping for all. Nucleic Acids Res 44(1):W147–W153. https://doi.org/10.1093/nar/gkw419
Article PubMed PubMed Central CAS Google Scholar
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19(5):455–477. https://doi.org/10.1089/cmb.2012.0021
Article PubMed PubMed Central CAS Google Scholar
Bastos RG, De Paiva PR, Rigo M, Veiga G, Queiroz MI (2011) Growth of Aphanothece microscopica Nägeli on exogenous sugars. Biosci J 27(1):156–161
Blin K, Shaw S, Augustijn HE, Reitz Z, Biermann F, Alanjary M, Fetter A, Terlouw BR, Metcalf WW, Helfrich EJN, Weber T (2023) AntiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. Nucleic Acids Res 51(W1):W46–W50. https://doi.org/10.1093/nar/gkad344
Article PubMed PubMed Central CAS Google Scholar
Caires TA, Affe HM (2021) Brazilian coast: a significant gap in the knowledge of cyanobacteria and their applications. In: Hozzein WN (ed) Cyanobacteria—recent advances in taxonomy and applications. IntechOpen, pp 1–16. https://doi.org/10.5772/intechopen.97151
Cheevadhanarak S, Paithoonrangsarid K, Prommeenate P, Kaewngam W, Musigkain A, Tragoonrung S, Tabata S, Kaneko T, Chaijaruwanich J, Sangsrakru D, Tangphatsornruang S, Chanprasert J, Thongsima S, Kusolmano K, Jeamton W, Dulsawat S, Klanchui A, Vorapreeda T, Chumchua V, Khannapho C, Thammarongtham C, Plengvidhya V, Subudhi S, Hongsthong A, Ruengjitchatchawalya M, Meechai A, Senachak J, Tanticharoen M (2012) Draft genome sequence of Arthrospira platensis C1 (PCC9438). Stand Genomic Sci 6:43–53. https://doi.org/10.4056/sigs.2525955
Article PubMed PubMed Central CAS Google Scholar
Chen S, Zhou Y, Chen Y, Gu J (2018) Fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34(17):i884–i890. https://doi.org/10.1093/bioinformatics/bty560
Article PubMed PubMed Central CAS Google Scholar
Davis JJ, Gerdes S, Olsen GJ, Olson R, Pusch GD, Shukla M, Vonstein V, Wattam AR, Yoo H (2016) PATtyFams: protein families for the microbial genomes in the PATRIC database. Front Microbiol 7:118. https://doi.org/10.3389/fmicb.2016.00118
Article PubMed PubMed Central Google Scholar
De la Rosa F, De Troch M, Malanga G, Hernando M (2020) Differential sensitivity of fatty acids and lipid damage in Microcystis aeruginosa (cyanobacteria) exposed to increased temperature. Comp Biochem Physiol C Toxicol Pharmacol 235:108773. https://doi.org/10.1016/j.cbpc.2020.108773
Article PubMed CAS Google Scholar
De Oliveira DT, Da Costa AAF, Costa FF, Da Rocha Filho GN, Do Nascimento LAS (2020) Advances in the biotechnological potential of Brazilian marine microalgae and cyanobacteria. Molecules 25(12):2908. https://doi.org/10.3390/molecules25122908
Article PubMed PubMed Central CAS Google Scholar
Delgado RT, Ferreira Filho RS, Mendes CRB (2025) The cyanobacteria genus Aphanothece: bioactive compounds and applications in biotechnology. Appl Biochem Biotechnol 197(7):4189–4223. https://doi.org/10.1007/s12010-025-05221-4
Article PubMed CAS Google Scholar
Demay J, Bernard C, Reinhardt A, Marie B (2019) Natural products from cyanobacteria: focus on beneficial activities. Mar Drugs 17(6):320. https://doi.org/10.3390/md17060320
Article PubMed PubMed Central CAS Google Scholar
Devi S, Rani N, Sagar A (2020) GC-MS analysis and antioxidant activity of two species of cyanobacteria isolated from Drang salt mine of district Mandi, Himachal Pradesh, India. Plant Arch 20(2):7505–7510
Druce E, Grego M, Bolhuis H, Johnes PJ, Sánchez-Baracaldo P (2023) Draft genome sequences of Synechococcus sp. strains CCAP1479/9, CCAP1479/10, CCAP1479/13, CCY0621, and CCY9618: five freshwater Syn/Pro clade Picocyanobacteria. J Genomics 11:26–36. https://doi.org/10.7150/jgen.81013
Article PubMed PubMed Central Google Scholar
Dvorák P, Casamatta DA, Hašler P, Jahodárová E, Norwich AR, Poulícková A (2017) Diversity of the cyanobacteria. In: Hallenbeck PC (ed) Modern topics in the phototrophic prokaryotes. Springer International Publishing, Cham, pp 3–46. https://doi.org/10.1007/978-3-319-46261-5_1
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5):1792–1797. https://doi.org/10.1093/nar/gkh340
Article PubMed PubMed Central CAS Google Scholar
Ewels P, Magnusson M, Lundin S, Käller M (2016) MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19):3047–3048. https://doi.org/10.1093/bioinformatics/btw354
Article PubMed PubMed Central CAS Google Scholar
Ferrinho S, Connaris H, Mouncey NJ, Goss RJM (2024) Compendium of metabolomic and genomic datasets for cyanobacteria: mined the gap. Water Res 256:121492. https://doi.org/10.1016/j.watres.2024.121492
Article PubMed CAS Google Scholar
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, Depamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone S-A, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, Gil IS, Wilson G, Wipat A (2008) The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 26:541–547. https://doi.org/10.1038/nbt1360
Article PubMed PubMed Central CAS Google Scholar
Fiore MF, Sant’Anna CL, Azevedo MTDP, Komárek J, Kaštovský J, Sulek J, Lorenzi AS (2007) The cyanobacterial genus Brasilonema, gen. nov., a molecular and phenotypic evaluation. J Phycol 43(4):789–798. https://doi.org/10.1111/j.1529-8817.2007.00376.x
Fuentes-Valdés JJ, Soto-Liebe K, Pérez-Pantoja D, Tamames J, Belmar L, Pedrós-Alió C, Garrido D, Vásquez M (2018) Draft genome sequences of Cylindrospermopsis raciborskii strains CS-508 and MVCC14, isolated from freshwater bloom events in Australia and Uruguay. Stand Genomic Sci 13:26. https://doi.org/10.1186/s40793-018-0323-1
Article PubMed PubMed Central CAS Google Scholar
Fujisawa T, Narikawa R, Maeda SI, Watanabe S, Kanesaki Y, Kobayashi K, Nomata J, Hanaoka M, Watanabe M, Ehira S, Suzuki E, Awai K, Nakamura Y (2017) CyanoBase: A large-scale update on its 20th anniversary. Nucleic Acids Res 45(D1):D551–D554. https://doi.org/10.1093/nar/gkw1131
Article PubMed CAS Google Scholar
Gheda SF, Ismail GA (2020) Natural products from some soil cyanobacterial extracts with potent antimicrobial, antioxidant and cytotoxic activities. An Acad Bras Cienc 92(2):1–18. https://doi.org/10.1590/0001-3765202020190934
Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen CY, Graham M, Van Domselaar G, Stothard P (2023) Proksee: In-depth characterization and visualization of bacterial genomes. Nucleic Acids Res 51(W1):W484–W492. https://doi.org/10.1093/nar/gkad326
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