Bachrati CZ, Hickson ID (2008) RecQ helicases: Guardian angels of the DNA replication fork. Chromosoma 117(3):219–233. https://doi.org/10.1007/s00412-007-0142-4
Article CAS PubMed Google Scholar
Blackburn EH, Greider CW, Szostak JW (2006) Telomeres and telomerase: The path from maize, tetrahymena and yeast to human cancer and aging. Nat Med 12(10):1133–1138. https://doi.org/10.1038/nm1006-1133
Article CAS PubMed Google Scholar
Brayer KJ, Segal DJ (2008) Keep your fingers off my DNA: Protein-protein interactions mediated by C2H2 zinc finger domains. Cell Biochem Biophys 50(3):111–131. https://doi.org/10.1007/s12013-008-9008-5
Article CAS PubMed Google Scholar
Brown CA, Murray AW, Verstrepen KJ (2010) Rapid expansion and functional divergence of subtelomeric gene families in yeasts. Current Biology : CB 20(10):895–903. https://doi.org/10.1016/j.cub.2010.04.027
Article CAS PubMed Google Scholar
Campbell MS, Holt C, Moore B, Yandell M (2014) Genome annotation and curation using MAKER and MAKER-P. Curr Protoc Bioinformatics. https://doi.org/10.1002/0471250953.bi0411s48
Article PubMed PubMed Central Google Scholar
Cobb JA, Bjergbaek L (2006) RecQ helicases: Lessons from model organisms. Nucleic Acids Res 34(15):4106–4114. https://doi.org/10.1093/nar/gkl557
Article PubMed PubMed Central Google Scholar
Croteau DL, Popuri V, Opresko PL, Bohr VA (2014) Human RecQ helicases in DNA repair, recombination, and replication. Annu Rev Biochem 83:519–552. https://doi.org/10.1146/annurev-biochem-060713-035428
Article CAS PubMed PubMed Central Google Scholar
Dai X, Kiuchi T, Zhou Y, Jia S, Xu Y, Katsuma S et al (2021) Horizontal gene transfer and gene duplication of β-fructofuranosidase confer lepidopteran insects metabolic benefits. Mol Biol Evol 38(7):2897–2914. https://doi.org/10.1093/molbev/msab080
Article CAS PubMed PubMed Central Google Scholar
Diotti R, Esposito M, Shen CH (2021) Telomeric and sub-telomeric structure and implications in fungal opportunistic pathogens. Microorganisms 9(7):1405. https://doi.org/10.3390/microorganisms9071405
Article CAS PubMed PubMed Central Google Scholar
Dmitrijeva M, Tackmann J, Matias Rodrigues JF, Huerta-Cepas J, Coelho LP, von Mering C (2024) A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature Ecology & Evolution 8(5):986–998. https://doi.org/10.1038/s41559-024-02357-0
Flores Martinez CL (2019) Comparative genomics of convergent evolution. Multiscale Evolutionary Models of Complex Adaptive Systems. Springer International Publishing, USA, In Evolution, Development and Complexity
Fumagalli M, Sironi M, Pozzoli U, Ferrer-Admettla A, Pattini L, Nielsen R (2011) Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution. PLoS Genet. https://doi.org/10.1371/journal.pgen.1002355
Article PubMed PubMed Central Google Scholar
Gao W, Khang CH, Park S, Lee Y, Kang S (2002) Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea. Genetics 162(1):103–112. https://doi.org/10.1093/genetics/162.1.103
Article CAS PubMed PubMed Central Google Scholar
Gordon TR (2017) Fusarium oxysporum and the Fusarium wilt syndrome. Annu Rev Phytopathol 55:23–39. https://doi.org/10.1146/annurev-phyto-080615-095919
Article CAS PubMed Google Scholar
Guo L, Yu H, Wang B, Vescio K, Delulio GA, Yang H et al (2021) Metatranscriptomic comparison of endophytic and pathogenic Fusarium-Arabidopsis interactions reveal plant transcriptional plasticity. Mol Plant Microbe Interact 34(9):1071–1083. https://doi.org/10.1094/MPMI-03-21-0063-R
Article CAS PubMed PubMed Central Google Scholar
Hane JK, Oliver RP (2010) In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes. BMC Genomics 11:655–655. https://doi.org/10.1186/1471-2164-11-655
Article CAS PubMed PubMed Central Google Scholar
Henry PM, Pincot DDA, Jenner BN, Borrero C, Aviles M, Nam M et al (2021) Horizontal chromosome transfer and independent evolution drive diversification in Fusarium oxysporum f sp fragariae. New Phytol. https://doi.org/10.1111/nph.17141
Article PubMed PubMed Central Google Scholar
Inglis PW, Rigden DJ, Mello LV, Louis EJ, Valadares-Inglis MC (2005) Monomorphic subtelomeric DNA in the filamentous fungus, Metarhizium anisopliae, contains a RecQ helicase-like gene. Molecular Genetics and Genomics: MGG 274(1):79–90. https://doi.org/10.1007/s00438-005-1154-5
Article CAS PubMed Google Scholar
Jacques F, Bolivar P, Pietras K, Hammarlund EU (2023) Roadmap to the study of gene and protein phylogeny and evolution-A practical guide. PLoS ONE 18(2):e0279597. https://doi.org/10.1371/journal.pone.0279597
Article CAS PubMed PubMed Central Google Scholar
Jain R, Rivera MC, Moore JE, Lake JA (2003) Horizontal gene transfer accelerates genome innovation and evolution. Mol Biol Evol 20(10):1598–1602. https://doi.org/10.1093/molbev/msg154
Article CAS PubMed Google Scholar
Jenner BN, Henry PM (2022) Pathotypes of Fusarium oxysporum f sp fragariae express discrete repertoires of accessory genes and induce distinct host transcriptional responses during root infection. Environ Microbiol. https://doi.org/10.1111/1462-2920.16101
Article PubMed PubMed Central Google Scholar
Jolivet P, Serhal K, Graf M, Eberhard S, Xu Z, Luke B, Teixeira MT (2019) A subtelomeric region affects telomerase-negative replicative senescence in saccharomyces cerevisiae. Sci Rep 9(1):1845. https://doi.org/10.1038/s41598-018-38000-9
Article CAS PubMed PubMed Central Google Scholar
Kaur E, Agrawal R, Sengupta S (2021) Functions of BLM helicase in cells: Is it acting like a double-edged sword? Front Genet 12:634789. https://doi.org/10.3389/fgene.2021.634789
Article CAS PubMed PubMed Central Google Scholar
Khakhar RR, Cobb JA, Bjergbaek L, Hickson ID, Gasser SM (2003) RecQ helicases: Multiple roles in genome maintenance. Trends Cell Biol 13(9):493–501. https://doi.org/10.1016/s0962-8924(03)00171-5
Article CAS PubMed Google Scholar
Kuzmin E, VanderSluis B, Nguyen Ba AN, Wang W, Koch EN, Usaj M et al (2020) Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science. https://doi.org/10.1126/science.aaz5667
Article PubMed PubMed Central Google Scholar
Langner T, Harant A, Gomez-Luciano LB, Shrestha RK, Malmgren A, Latorre SM et al (2021) Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus. PLoS Genet 17(2):e1009386. https://doi.org/10.1371/journal.pgen.1009386
Article CAS PubMed PubMed Central Google Scholar
Larsen NB, Hickson ID (2013) RecQ helicases: Conserved guardians of genomic integrity. Adv Exp Med Biol 767:161–184. https://doi.org/10.1007/978-1-4614-5037-5_8
Article CAS PubMed Google Scholar
Letunic I, Bork P (2021) Intera
Comments (0)