Oh J, Byrd AL, Deming C, Conlan S, NISC Comparative Sequencing Program, Kong HH, et al. Biogeography and individuality shape function in the human skin metagenome. Nature. 2014;514:59–64.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Oh J, Byrd AL, Park M, NISC Comparative Sequencing Program, Kong HH, Segre JA. Temporal Stability of the human skin Microbiome. Cell. 2016;165:854–66.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Byrd AL, Belkaid Y, Segre JA. The human skin microbiome. Nat Rev Microbiol. 2018;16:143–55.

Article  CAS  PubMed  Google Scholar 

Bernard KA, Funke G. Corynebacterium. In: Whitman WB, Rainey F, Kämpfer P, Trujillo M, Chun J, DeVos P, Hedlund B, Dedysh S, editors. Bergey’s manual of systematics of Archaea and Bacteria. New York, NY: John Wiley & Sons, Inc.; 2015. pp. 1–70.

Google Scholar 

Oliveira A, Oliveira LC, Aburjaile F, Benevides L, Tiwari S, Jamal SB, et al. Insight of Genus Corynebacterium: ascertaining the role of pathogenic and non-pathogenic species. Front Microbiol. 2017;8:1937.

Article  PubMed  PubMed Central  Google Scholar 

Funke G, von Graevenitz A, Clarridge JE, Bernard KA. Clinical microbiology of coryneform bacteria. Clin Microbiol Rev. 1997;10:125–59.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bernard K. The genus corynebacterium and other medically relevant coryneform-like bacteria. J Clin Microbiol. 2012;50:3152–8.

Article  PubMed  PubMed Central  Google Scholar 

Swe PM, Heng NCK, Ting YT, Baird HJ, Carne A, Tauch A, et al. ef1097 and ypkK encode enterococcin V583 and corynicin JK, members of a new family of antimicrobial proteins (bacteriocins) with modular structure from Gram-positive bacteria. Microbiol (Reading). 2007;153(Pt 10):3218–27.

Article  CAS  Google Scholar 

Goldbeck O, Weixler D, Eikmanns BJ, Riedel CU. In Silico Prediction and Analysis of Unusual Lantibiotic Resistance operons in the Genus Corynebacterium. Microorganisms. 2021;9(3):646.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ramsey MM, Freire MO, Gabrilska RA, Rumbaugh KP, Lemon KP. Staphylococcus aureus shifts toward Commensalism in response to Corynebacterium Species. Front Microbiol. 2016;7:1230.

Article  PubMed  PubMed Central  Google Scholar 

Bomar L, Brugger SD, Yost BH, Davies SS, Lemon KP. Corynebacterium accolens releases antipneumococcal free fatty acids from human nostril and skin surface triacylglycerols. mBio. 2016;7:e01725–15.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Horn KJ, Jaberi Vivar AC, Arenas V, Andani S, Janoff EN, Clark SE. Corynebacterium species inhibit Streptococcus pneumoniae colonization and Infection of the Mouse Airway. Front Microbiol. 2022;12:804935.

Article  PubMed  PubMed Central  Google Scholar 

Saheb Kashaf S, Proctor DM, Deming C, Saary P, Hölzer M, NISC Comparative Sequencing Program. Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions. Nat Microbiol. 2022;7:169–79.

Article  CAS  PubMed  Google Scholar 

Smith RF. A medium for the study of the ecology of human cutaneous diphtheroids. J Gen Microbiol. 1969;57:411–7.

Article  CAS  PubMed  Google Scholar 

Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114–20.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a New Genome Assembly Algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19:455–77.

Article  CAS  PubMed  PubMed Central  Google Scholar 

García-Alcalde F, Okonechnikov K, Carbonell J, Cruz LM, Götz S, Tarazona S, et al. QualiMap: evaluating next-generation sequencing alignment data. Bioinformatics. 2012;28:2678–9.

Article  PubMed  Google Scholar 

Wick RR, Judd LM, Gorrie CL, Holt KE. Unicycler: resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol. 2017;13:e1005595.

Article  PubMed  PubMed Central  Google Scholar 

Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics. 2008;9:75.

Article  PubMed  PubMed Central  Google Scholar 

Huerta-Cepas J, Forslund K, Coelho LP, Szklarczyk D, Jensen LJ, von Mering C, et al. Fast genome-wide functional annotation through Orthology assignment by eggNOG-Mapper. Mol Biol Evol. 2017;34:2115–22.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Treangen TJ, Ondov BD, Koren S, Phillippy AM. The Harvest suite for Rapid Core-Genome Alignment and visualization of thousands of Intraspecific Microbial genomes. Genome Biol. 2014;15:524.

Article  PubMed  PubMed Central  Google Scholar 

Price MN, Dehal PS, Arkin AP. FastTree 2–approximately maximum-likelihood trees for large alignments. PLoS ONE. 2010;5:e9490.

Article  PubMed  PubMed Central  Google Scholar 

Letunic I, Bork P. Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Res. 2021;49(W1):W293–6.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics. 2011;12:402.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Alcock BP, Huynh W, Chalil R, Smith KW, Raphenya AR, Wlodarski MA, et al. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 2023;51(D1):D690–9.

Article  CAS  PubMed  Google Scholar 

Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J. JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics. 2016;32:929–31.

Article  CAS  PubMed  Google Scholar 

Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, et al. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. Nucleic Acids Res. 2023;51(W1):W46–W50.

Article  PubMed  PubMed Central  Google Scholar 

Lechner M, Findeiss S, Steiner L, Marz M, Stadler PF, Prohaska SJ. Proteinortho: detection of (co-)orthologs in large-scale analysis. BMC Bioinformatics. 2011;12:124.

Article  PubMed  PubMed Central  Google Scholar 

Lomholt H, Kilian M. Population genetic analysis of Propionibacterium acnes identifies a subpopulation and epidemic clones associated with acne. PLoS ONE. 2010;5:e12277.

Article  PubMed  PubMed Central  Google Scholar 

Salar-Vidal L, Achermann Y, Aguilera-Correa JJ, Poehlein A, Esteban J, Brüggemann H, et al. Genomic analysis of Cutibacterium acnes strains isolated from prosthetic joint Infections. Microorganisms. 2021;9:1500.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A. 2009;106:19126–31.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nolden L, Beckers G, Möckel B, Pfefferle W, Nampoothiri KM, Krämera R, et al. Urease of Corynebacterium glutamicum: organization of corresponding genes and investigation of activity. FEMS Microbiol Lett. 2000;189:305–10.

Article  CAS  PubMed  Google Scholar 

Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature. 2013;499:431–7.

Article  CAS  PubMed  Google Scholar 

Li Z, Xia J, Jiang L, Tan Y, An Y, Zhu X, et al. Characterization of the human skin resistome and identification of two microbiota cutotypes. Microbiome. 2021;9:47.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dekio I, Asahina A, Shah HN. Unravelling the eco-specificity and pathophysiological properties of Cutibacterium species in the light of recent taxonomic changes. Anaerobe. 2021;71:102411.

Article  CAS  PubMed  Google Scholar 

Szemraj M, Kwaszewska A, Pawlak R, Szewczyk EM. Macrolide, lincosamide, and Streptogramin B resi