World Health Organization, Health Care Facility Level., 2019. Implementation Manual to Prevent and Control the Spread of Carbapenem-resistant Organisms at the National and : Interim Practical Manual Supporting Implementation of the Guidelines for the Prevention and Control of Carbapenem-resistant Enterobacteriaceae, Acinetobacter baumannii and Pseudomonas aeruginosa in Health Care Facilities (No. WHO/UHC/ SDS/2019.6). World Health Organization.
Tacconelli E, Carrara E, Savoldi A, Harbarth S, Mendelson M, Monnet DL, Pulcini C, Kahlmeter G, Kluytmans J, Carmeli Y, Ouellette M, Outterson K, Patel J, Cavaleri M, Cox EM, Houchens CR, Grayson ML, Hansen P, Singh N, Theuretzbacher U, Magrini N, WHO Pathogens Priority List Working Group. Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis. Lancet Infect Dis. 2018;18(3):318–27. https://doi.org/10.1016/S1473-3099(17)30753-3. Epub 2017 Dec 21. PMID: 29276051.
Queenan AM, Bush K. Carbapenemases: the versatile beta-lactamases. Clin Microbiol Rev. 2007;20(3):440 – 58, table of contents. https://doi.org/10.1128/CMR.00001-07. PMID: 17630334; PMCID: PMC1932750.
Partridge SR, Kwong SM, Firth N, Jensen SO. Mobile Genetic Elements Associated with Antimicrobial Resistance. Clin Microbiol Rev. 2018;31(4):e00088–17. https://doi.org/10.1128/CMR.00088-17. PMID: 30068738; PMCID: PMC6148190.
Article CAS PubMed PubMed Central Google Scholar
Pourbaghi E, Doust RH, Rahbar M, Rahnamaye M. Investigation of OXA-23, OXA-24, OXA-40, OXA-51, and OXA-58 genes in Carbapenem-Resistant Escherichia coli and Klebsiella pneumoniae isolates from patients with urinary tract infections. Jundishapur J Microbiol (JJM) [online]. 2022;15(2):0–0.
Leski TA, Bangura U, Jimmy DH, Ansumana R, Lizewski SE, Li RW, Stenger DA, Taitt CR, Vora GJ. Identification of blaOXA–51–like, blaOXA–58, blaDIM–1, and blaVIM carbapenemase genes in hospital Enterobacteriaceae isolates from Sierra Leone. J Clin Microbiol. 2013;51(7):2435–8. https://doi.org/10.1128/JCM.00832-13. Epub 2013 May 8. PMID: 23658259; PMCID: PMC3697688.
Article CAS PubMed PubMed Central Google Scholar
Merkier AK, Centrón D. Bla(OXA-51)-type beta-lactamase genes are ubiquitous and vary within a strain in Acinetobacter baumannii. Int J Antimicrob Agents. 2006;28(2):110–3. https://doi.org/10.1016/j.ijantimicag.2006.03.023. Epub 2006 Jul 17. PMID: 16844350.
Article CAS PubMed Google Scholar
Al-Hassan L, El Mehallawy H, Amyes SG. Diversity in Acinetobacter baumannii isolates from paediatric cancer patients in Egypt. Clin Microbiol Infect. 2013;19(11):1082-8. https://doi.org/10.1111/1469-0691.12143. Epub 2013 Feb 15. PMID: 23413888.
Turton JF, Ward ME, Woodford N, Kaufmann ME, Pike R, Livermore DM, Pitt TL. The role of ISAba1 in expression of OXA carbapenemase genes in Acinetobacter baumannii. FEMS Microbiol Lett. 2006;258(1):72 – 7. https://doi.org/10.1111/j.1574-6968.2006.00195.x. PMID: 16630258.
Poirel L, Marqué S, Héritier C, Segonds C, Chabanon G, Nordmann P. OXA-58, a novel class D -lactamase involved in resistance to carbapenems in Acinetobacter baumannii. Antimicrob Agents Chemother. 2005;49(1):202–8. https://doi.org/10.1128/AAC.49.1.202-208.2005. PMID: 15616297; PMCID: PMC538857.
Article CAS PubMed PubMed Central Google Scholar
Evans BA, Amyes SG. OXA β-lactamases. Clin Microbiol Rev. 2014;27(2):241–63. https://doi.org/10.1128/CMR.00117-13. PMID: 24696435; PMCID: PMC3993105.
Article CAS PubMed PubMed Central Google Scholar
Patel G, Bonomo RA. Status report on carbapenemases: challenges and prospects. Expert Rev Anti Infect Ther. 2011;9(5):555–70. https://doi.org/10.1586/eri.11.28. PMID: 21609267.
Article CAS PubMed Google Scholar
Noel HR, Petrey JR, Palmer LD. Mobile genetic elements in Acinetobacter antibiotic-resistance acquisition and dissemination. Ann N Y Acad Sci. 2022;1518(1):166–82. https://doi.org/10.1111/nyas.14918. Epub 2022 Oct 31. PMID: 36316792; PMCID: PMC9771954.
Article CAS PubMed PubMed Central Google Scholar
CLSI Committee. The Clinical and Laboratory Standards Institute Performance Standards for Antimicrobial susceptibility testing; M100-ED32. Wayne, PA: CLSI; 2022.
Soumet C, Ermel G, Fach P, Colin P. Evaluation of different DNA extraction procedures for the detection of Salmonella from chicken products by polymerase chain reaction. Lett Appl Microbiol. 1994;19(5):294-8. https://doi.org/10.1111/j.1472-765x.1994.tb00458.x. PMID: 7765440.
Woodford N, Ellington MJ, Coelho JM, Turton JF, Ward ME, Brown S, Amyes SG, Livermore DM. Multiplex PCR for genes encoding prevalent OXA carbapenemases in Acinetobacter spp. Int J Antimicrob Agents. 2006;27(4):351–3. https://doi.org/10.1016/j.ijantimicag.2006.01.004. Epub 2006 Mar 24. PMID: 16564159.
Article CAS PubMed Google Scholar
Jeong SH, Bae IK, Park KO, An YJ, Sohn SG, Jang SJ, Sung KH, Yang KS, Lee K, Young D, Lee SH. Outbreaks of imipenem-resistant Acinetobacter baumannii producing carbapenemases in Korea. J Microbiol. 2006;44(4):423–31. PMID: 16953178.
Das BJ, Wangkheimayum J, Singha KM, Bhowmik D, Dhar D, Bhattacharjee A. Propagation of blaKPC-2 within two sequence types of Escherichia coli in a tertiary referral hospital of northeast India. Gene Rep. 2021;24:101283.
Das BJ, Singha KM, Wangkheimayum J, Bhowmik D, Chanda DD, Bhattacharjee A. Occurrence of blaOXA-48 type carbapenemase in Escherichia coli with coexisting resistance determinants: a report from India. Gene Rep. 2022;26:101459.
Li S, Meadow Anderson L, Yang JM, Lin L, Yang H. DNA transformation via local heat shock. Appl Phys Lett. 2007;91(1):013902.
Das BJ, Singha KM, Chanda DD, Bhattacharjee A. Elimination of diverse Inc type plasmids carrying carbapenemase genes within Escherichia coli of clinical origin: a single-center study from North-east India. Gene Rep. 2023;31:101770.
Chen S, Zhou Y, Chen Y, Gu J. Fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34(17):i884–90. https://doi.org/10.1093/bioinformatics/bty560. PMID: 30423086; PMCID: PMC6129281.
Article CAS PubMed PubMed Central Google Scholar
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19(5):455–77. https://doi.org/10.1089/cmb.2012.0021. Epub 2012 Apr 16. PMID: 22506599; PMCID: PMC3342519.
Article CAS PubMed PubMed Central Google Scholar
Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M. MeDuSa: a multi-draft based scaffolder. Bioinformatics. 2015;31(15):2443–51. https://doi.org/10.1093/bioinformatics/btv171. Epub 2015 Mar 25. PMID: 25810435.
Article CAS PubMed Google Scholar
Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30(14):2068-9. https://doi.org/10.1093/bioinformatics/btu153. Epub 2014 Mar 18. PMID: 24642063.
Padmalakshmi Y, Shanthi M, Sekar U, Arunagiri K. Phenotypic and molecular Characterisation of Carbapenemases in Acinetobacter Species in a Tertiary Care Centre in Tamil Nadu, India. Natil Lab Med. 2015.
Mohanty S, Gajanand M, Gaind R. Identification of carbapenemase-mediated resistance among Enterobacteriaceae bloodstream isolates: A molecular study from India. Indian J Med Microbiol. 2017 Jul-Sep;35(3):421–425. https://doi.org/10.4103/ijmm.IJMM_16_386. PMID: 29063891.
Manohar P, Leptihn S, Lopes BS, Nachimuthu R. Dissemination of carbapenem resistance and plasmids encoding carbapenemases in Gram-negative bacteria isolated in India. JAC Antimicrob Resist. 2021;3(1):dlab015. https://doi.org/10.1093/jacamr/dlab015. PMID: 34223092; PMCID: PMC8210035.
Article PubMed PubMed Central Google Scholar
Kumari N, Kumar M, Katiyar A, Kumar A, Priya P, Kumar B, Biswas NR, Kaur P. Genome-wide identification of carbapenem-resistant Gram-negative bacterial (CR-GNB) isolates retrieved from hospitalized patients in Bihar, India. Sci Rep. 2022;12(1):8477. https://doi.org/10.1038/s41598-022-12471-3. PMID: 35590022; PMCID: PMC9120164.
Article CAS PubMed PubMed Central Google Scholar
Chen TL, Lee YT, Kuo SC, Hsueh PR, Chang FY, Siu LK, Ko WC, Fung CP. Emergence and distribution of plasmids bearing the blaOXA-51-like gene with an upstream ISAba1 in carbapenem-resistant Acinetobacter baumannii isolates in Taiwan. Antimicrob Agents Chemother. 2010;54(11):4575–81. https://doi.org/10.1128/AAC.00764-10. Epub 2010 Aug 16. PMID: 20713680; PMCID: PMC2976157.
Article CAS PubMed PubMed Central Google Scholar
Lee YT, Kuo SC, Chiang MC, Yang SP, Chen CP, Chen TL, Fung CP. Emergence of carbapenem-resistant non-baumannii species of Acinetobacter harboring a blaOXA-51-like gene that is intrinsic to A. baumannii. Antimicrob Agents Chemother. 2012;56(2):1124–7. https://doi.org/10.1128/AAC.00622-11. Epub 2011 Nov 14. PMID: 22083478; PMCID: PMC3264228.
Article CAS PubMed PubMed Central Google Scholar
Poirel L, Potron A, Nordmann P. OXA-48-like carbapenemases: the phantom menace. J Antimicrob Chemother. 2012;67(7):1597–606. https://doi.org/10.1093/jac/dks121. Epub 2012 Apr 11. PMID: 22499996.
Article CAS PubMed Google Scholar
Manohar P, Shanthini T, Ayyanar R, Bozdogan B, Wilson A, Tamhankar AJ, Nachimuthu R, Lopes BS. The distribution of carbapenem- and colistin-resistance in Gram-negative bacteria from the Tamil Nadu region in India. J Med Microbiol. 2017;66(7):874–883. https://doi.org/10.1099/jmm.0.000508. Epub 2017 Jul 3. PMID: 28671537.
Bonomo RA, Burd EM, Conly J, Limbago BM, Poirel L, Segre JA, Westblade LF. Carbapenemase-producing Organisms: A Global Scourge. Clin Infect Dis. 2018;66(8):1290–7. https://doi.org/10.1093/cid/cix893. PMID: 29165604; PMCID: PMC5884739.
Article CAS PubMed Google Scholar
van Loon K. Voor In ‘t Holt AF, Vos MC. A Systematic Review and Meta-analyses of the Clinical Epidemiology of Carbapenem-Resistant Enterobacteriaceae. Antimicrob Agents Chemother. 2017;62(1):e01730-17. https://doi.org/10.1128/AAC.01730-17. PMID: 29038269; PMCID: PMC5740327.
Papp-Wallace KM, Endimiani A, Taracila MA, Bonomo RA. Carbapenems: past, present, and future. Antimicrob Agents Chemother. 2011;55(11):4943-60. https://doi.org/10.1128/AAC.00296-11. Epub 2011 Aug 22. PMID: 21859938; PMCID: PMC3195018.
Poirel L, Nordmann P. Carbapenem resistance in Acinetobacter baumannii: mechanisms and epidemiology. Clin Microbiol Infect. 2006;12(9):826 – 36. https://doi.org/10.1111/j.1469-0691.2006.01456.x. PMID: 16882287.
Gur D, Korten V, Unal S, Deshpande LM, Castanheira M. Increasing carbapenem resistance due to the clonal dissemination of oxacillinase (OXA-23 and OXA-58)-producing Acinetobacter baumannii: report from the Turkish SENTRY Program sites. J Med Microbiol. 2008;57(Pt 12):1529–1532. https://doi.org/10.1099/jmm.0.2008/002469-0. PMID: 19018025.
Nguyen AT, Pham SC, Ly AK, Nguyen CVV, Vu TT, Ha TM. Overexpression of blaOXA-58 gene driven by ISAba3 is Associated with Imipenem Resistance in a clinical Acinetobacter baumannii isolate from Vietnam. Biomed Res Int. 2020;2020:7213429. https://doi.org/10.1155/2020/7213429. PMID: 32802871; PMCID: PMC7420922.
Comments (0)