Abdelwahab SI, Taha MME, Albasheer O, Alharbi A, Ahmed AA, Abdelmola A, Ali SA, El Hassan LA, Darraj M, Mohamed AH (2024) Tuberculosis research advances and future trends: A bibliometric knowledge mapping approach. Medicine 103(30):e39052
Adegbite BR, Dreyer V, Agbo J, Mevyann RC, Mfoumbi G, Ndanga MED, Biyogho CM, Edoa JR, M’Baidiguim FB, Ndong A, Alabi AS, Kremsner PG, Adegnika AA, Niemann S, Grobusch MP (2025) Clinical epidemiology, genetic diversity, and drug susceptibility patterns by whole genome sequencing of Mycobacterium tuberculosis complex isolates in Gabon from 2012 to 2022. IJID Reg 14:100501. https://doi.org/10.1016/j.ijregi.2024.100501
Advani J, Verma R, Chatterjee O, Pachouri PK, Upadhyay P, Singh R, Yadav J, Naaz F, Ravikumar R, Buggi S, Suar M, Gupta UD, Pandey A, Chauhan DS, Tripathy SP, Gowda H, Prasad TSK (2019) Whole genome sequencing of mycobacterium tuberculosis clinical isolates from india reveals genetic heterogeneity and region-specific variations that might affect drug susceptibility. Front Microbiol 10:309. https://doi.org/10.3389/fmicb.2019.00309
Article PubMed PubMed Central Google Scholar
Aria M, Cuccurullo C (2017) bibliometrix: An R-tool for comprehensive science mapping analysis. J informetrics 11(4):959–975
AroraVK, Jindal SK, Katiyar SK, Behra D, Talwar D, Sarin R, Dhar R, Mehta P, Bhargava S, Singhal P, Joshi S, Tiwaskar M, Nikam C, Chatterjee A, Vora A (2023) Genomic revolution: Transforming tuberculosis diagnosis and treatment with the use of whole genome sequencing - a consensus statement. Indian J Tuberc 70(4):383–389. 2023.10.002. Available at: https://www.sciencedirect.com/science/article/pii/S0019570723001907
Aung HL, Chaidir L, Pitaloka DAE, Miyahara Y, Kumar N, Soeroto AY, Cook GM, van Crevel R, Alisjahbana B, Peacock SJ, Hill PC (2025) Whole genome sequencing reveals novel resistance-conferring mutations and large genome deletions in drug-resistant Mycobacterium tuberculosis isolates from Indonesia. J Glob Antimicrob Resist 44:314–318. https://doi.org/10.1016/j.jgar.2025.07.017
Article PubMed CAS Google Scholar
Ballif M, Harino P, Ley S, Carter R, Coulter C, Niemann S, Borrell S, Fenner L, Siba P, Phuanukoonnon S, Gagneux S, Beck HP (2012) Genetic diversity of Mycobacterium tuberculosis in Madang, Papua New Guinea. Int J Tuberc Lung Dis 16(8):1100–1107. https://doi.org/10.5588/ijtld.11.0779
Article PubMed CAS Google Scholar
Burayu ET, Degefa BD (2024) Exploration of iron deficiency anemia and its associated factors among pregnant women seeking antenatal care in public health facilities of southwestern Ethiopia. A mixed study. AJOG Glob Rep 4(4):100417. https://doi.org/10.1016/j.xagr.2024.100417
Article PubMed PubMed Central Google Scholar
Burnham JF (2006) Scopus database: a review. Biomedical Digit Libr 3(1):1–8
Cabibbe AM, Moghaddasi K, Batignani V, Morgan GSK, Di Marco F, Cirillo DM (2024) Nanopore-based targeted sequencing test for direct tuberculosis identification, genotyping, and detection of drug resistance mutations: a side-by-side comparison of targeted next-generation sequencing technologies. J Clin Microbiol 62(10):e0081524. https://doi.org/10.1128/jcm.00815-24
Article PubMed PubMed Central Google Scholar
Chen C (2014) The citespace manual. Coll Comput Inf 1(1):1–84
Comas I, Borrell S, Roetzer A, Rose G, Malla B, Kato-Maeda M, Galagan J, Niemann S, Gagneux S (2011) Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes. Nat Genet 44(1):106–110. https://doi.org/10.1038/ng.1038
Article PubMed PubMed Central CAS Google Scholar
Couvin D, Allaguy AS, Ez-Zari A, Jagielski T, Rastogi N (2025) Molecular typing of Mycobacterium tuberculosis: a review of current methods, databases, softwares, and analytical tools. FEMS Microbiol Rev 49. https://doi.org/10.1093/femsre/fuaf017
Dippenaar A, Sylvester T, Ealand C, Ismail N, Rakotosamimanana N, Miller M, Kana BD, Warren RM (2024) Collaborative learning in the digital age: empowering tuberculosis researchers through virtual training. J Microbiol Biol Educ 25(3):e0011424. https://doi.org/10.1128/jmbe.00114-24
Article PubMed PubMed Central Google Scholar
Elton L, Aydin A, Stoker N, Rofael S, Wildner LM, Abdul JBPAA, Tembo J, Hamid MA, Claujens Chastel MM, Canseco JO, Doyle R, Satta G, O’Grady J, Witney A, Ntoumi F, Zumla A, McHugh, TD (2025) A pragmatic pipeline for drug resistance and lineage identification in Mycobacterium tuberculosis using whole genome sequencing. PLOS Global Public Health 5(2):e0004099. https://doi.org/10.1371/journal.pgph.0004099. Available at: https://doi.org/10.1371/journal.pgph.0004099
Fang Q, Li X, Lu Y, Gao J, Wu Y, Chen Y, Che Y (2025) Whole-genome sequencing and machine learning reveal key drivers of delayed sputum conversion in rifampicin-resistant tuberculosis. Front Cell Infect Microbiol 15:1641385. https://doi.org/10.3389/fcimb.2025.1641385
Article PubMed PubMed Central Google Scholar
GhodousiA, Cannas A, Tagliani E, Batignani V, Bisognin F, Borroni E, Butera O, Codecasa LR, Monte PD, De Maio F, Delogu G, Mattei G, Matteo G, Messina F, Omrani M, Perilli C, Sali M, Sotgiu G, Tadolini M, Torri S, Vismara C, Girardi E, Cirillo DM (2025) Comprehensive whole genome sequencing dataset of mycobacterium tuberculosis strains collected across Italy. Scientific Data 12(1):624. Available at: https://doi.org/10.1038/s41597-025-04966-1
Guo Y, Li J, Lin L (2025) Trends and forecast of drug-resistant tuberculosis: a global perspective from the GBD study 2021. Front Public Health 13:1550199. https://doi.org/10.3389/fpubh.2025.1550199
Article PubMed PubMed Central Google Scholar
Head MG, Fitchett JR, Nageshwaran V, Kumari N, Hayward A, Atun R (2016) Research investments in global health: a systematic analysis of UK infectious disease research funding and global health metrics 1997–2013. EBioMedicine 3:180–190. https://doi.org/10.1016/j.ebiom.2015.12.016
KataleBZ, Rofael S, Elton L, Mbugi EV, Mpagama SG, Mtunga D, Mafie MG, Mbelele PM, Williams C, Mvungi HC, Williams R, Saku GA, Ruta JA, McHugh TD, Matee MI (2024) Clinical application of whole-genome sequencing in the management of extensively drug-resistant tuberculosis: a case report. Ann Clin Microbiol Antimicrob 23(1):76. Available at: https://doi.org/10.1186/s12941-024-00737-9
Koleske BN, Jacobs WR, Bishai WR (2023) The Mycobacterium tuberculosis genome at 25 years: lessons and lingering questions. J Clin Investig 133:19
Lawn SD, Nicol MP (2011) Xpert® MTB/RIF assay: development, evaluation and implementation of a new rapid molecular diagnostic for tuberculosis and rifampicin resistance. Future Microbiol 6(9):1067–1082. https://doi.org/10.2217/fmb.11.84
Article PubMed PubMed Central Google Scholar
Lee RS, Behr MA (2016) The implications of whole-genome sequencing in the control of tuberculosis. Ther Adv Infect Dis 3(2):47–62. https://doi.org/10.1177/2049936115624630
Article PubMed CAS Google Scholar
Li Y, Bian W, Wu S, Zhang J, Li D (2023) Metagenomic next-generation sequencing for Mycobacterium tuberculosis complex detection: a meta-analysis. Front Public Health 11:1224993. https://doi.org/10.3389/fpubh.2023.1224993
Article PubMed PubMed Central Google Scholar
Long Q, Zhou Q, Ji L, Wu J, Wang W, Xie J (2012) Mycobacterium smegmatis genomic characteristics associated with its saprophyte lifestyle. J Cell Biochem 113(10):3051–3055. https://doi.org/10.1002/jcb.24199
Article PubMed CAS Google Scholar
Manjunath P, Ahmad J, Samal J, Rani A, Sheikh JA, Zarin S, Ahuja Y, Alam A, Hasnain SE, Ehtesham NZ (2024) Expression of a unique M. tuberculosis DNA MTase Rv1509 in M. smegmatis alters the gene expression pattern and enhances virulence. Front Microbiol 15:1344857
Article PubMed PubMed Central CAS Google Scholar
Manson AL, Cohen KA, Abeel T, Desjardins CA, Armstrong DT, Barry CE 3rd, Brand J, Chapman SB, Cho SN, Gabrielian A, Gomez J, Jodals AM, Joloba M, Jureen P, Lee JS, Malinga L, Maiga M, Nordenberg D, Noroc E, Romancenco E, Salazar A, Ssengooba W, Velayati AA, Winglee K, Zalutskaya A, Via LE, Cassell GH, Dorman SE, Ellner J, Farnia P, Galagan JE, Rosenthal A, Crudu V, Homorodean D, Hsueh PR, Narayanan S, Pym AS, Skrahina A, Swaminathan S, Van der Walt M, Alland D, Bishai WR, Cohen T, Hoffner S, Birren BW, Earl AM (2017) Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance. Nat Genet 49(3):395–402. https://doi.org/10.1038/ng.3767
NafadeV, Nash M, Huddart S, Pande T, Gebreselassie N, Lienhardt C, Pai M (2018) A bibliometric analysis of tuberculosis research, 2007–2016. PLOS ONE 13(6):e0199706. Available at: https://doi.org/10.1371/journal.pone.0199706
NiemannS, Köser CU, Gagneux S, Plinke C, Homolka S, Bignell H, Carter RJ, Cheetham RK, Cox A, Gormley NA, Kokko-Gonzales P, Murray LJ, Rigatti R, Smith VP, Arends FPM, Cox HS, Smith G, Archer JAC (2009) Genomic diversity among drug sensitive and multidrug resistant isolates of my cobacterium tuberculosis with Identical DNA Fingerprints. PLOS ONE 4(10):e7407. Available at: https://doi.org/10.1371/journal.pone.0007407
Organization WH, Staff WHO (2013) Global tuberculosis report 2013. World health organization
Rivière E, Heupink T, Ismail N, Dippenaar A, Clarke C, Abebe G, Heusden P, Warren R, Meehan J, Van Rie A (2020) Capacity building for whole genome sequencing of Mycobacterium tuberculosis and bioinformatics in high TB burden countries. Brief Bioinform 1–10. https://doi.org/10.1093/bib/bbaa246
Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S (2013) Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study. PLoS Med 10(2):e1001387. https://doi.org/10.1371/journal.pmed.1001387
Article PubMed PubMed Central Google Scholar
Sánchez-Busó L, Yeats CA, Taylor B, Goater RJ, Underwood A, Abudahab K, Argimón S, Ma KC, Mortimer TD, Golparian D (2021) A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch. Genome Med 13(1):61
Article PubMed PubMed Central Google Scholar
Sherry NL, Lee JYH, Giulieri SG, Connor CH, Horan K, Lacey JA, Lane CR, Carter GP, Seemann T, Egli A, Stinear TP, Howden BP (2025) Genomics for antimicrobial resistance-progress and future directions. Antimicrob Agents Chemother 69(5):e0108224. https://doi.org/10.1128/aac.01082-24
Article PubMed PubMed Central CAS Google Scholar
Smith JP, Oeltmann JE, Hill AN, Tobias JL, Boyd R, Click ES, Finlay A, Mondongo C, Zetola NM, Moonan PK (2022) Characterizing tuberculosis transmission dynamics in high-burden urban and rural settings. Scientific Reports 12(1):6780. https://doi.org/10.1038/s41598-022-10488-2. Available at: https://doi.org/10.1038/s41598-022-10488-2
Sparks IL, Derbyshire KM, Jacobs WR Jr., Morita YS (2023) Mycobacterium smegmatis: The Vanguard of Mycobacterial Research. J Bacteriol 205(1):e0033722. https://doi.org/10.1128/jb.00337-22
Article PubMed PubMed Central CAS Google Scholar
Starks AM, Avilés E, Cirillo DM, Denkinger CM, Dolinger DL, Emerson C, Gallarda J, Hanna D, Kim PS, Liwski R, Miotto P, Schito M, Zignol M (2015) Collaborative effort for a centralized worldwide tuberculosis relational sequencing data platform. Clin Infect Dis 61(3):S141-6. https://doi.org/10.1093/cid/civ610
Van Dijk EL, Auger H, Jaszczyszyn Y, Thermes C (2014) Ten years of next-generation sequencing technology. Trends Genet 30(9):418–426
Comments (0)