Unveiling genetic variation among Bharal () in the Indian Himalayas using nuclear markers

Aryal A, Brunton DH, Campus A et al (2014) Human-Carnivore conflict: ecological and economical sustainability of predation on livestock by snow Leopard and other carnivores in the himalaya Human – carnivore conflict : ecological and economical sustainability of predation on livestock. https://doi.org/10.1007/s11625-014-0246-8. by snow leop

Benton TG, Bowler DE (2012) Linking dispersal to Spatial dynamics. Dispersal ecology and evolution. Oxford University Press, pp 251–265

Bhattacharya A, Chatterjee N, Rawat GS, Habib B (2020) Blue sheep resource selection in alpine grasslands of a Western Himalayan landscape – A point process approach. Zool Stud 59:1–15. https://doi.org/10.6620/ZS.2020.59-11

Article  Google Scholar 

Chang YY, Chao MC, Ding ST et al (2012) Development of microsatellite markers in an ungulate mammal, the Formosan Serow (Capricornis swinhoei). Conserv Genet Resour 4:755–757. https://doi.org/10.1007/s12686-012-9637-2

Article  Google Scholar 

Chetri M, Odden M, Wegge P (2017) Snow Leopard and Himalayan wolf: food habits and prey selection in the central himalayas, Nepal. PLoS ONE 12:e0170549. https://doi.org/10.1371/journal.pone.0170549

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dalui S, Khatri H, Singh SK et al (2020) Fine-scale landscape genetics unveiling contemporary asymmetric movement of red panda (Ailurus fulgens) in Kangchenjunga landscape, India. Sci Rep 10:1–13. https://doi.org/10.1038/s41598-020-72427-3

Article  Google Scholar 

Dolker S, Jabin G, Singh SK et al (2023) Landscape genetics identified conservation priority areas for blue sheep (Pseudois nayaur) in the Indian Trans-Himalayan region. Sci Rep 13:18152. https://doi.org/10.1038/s41598-023-44823-y

Article  CAS  PubMed  PubMed Central  Google Scholar 

Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software < scp > structure: a simulation study. Mol Ecol 14:2611–2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x

Article  CAS  PubMed  Google Scholar 

Frankham R (2012) How closely does genetic diversity in finite populations conform to predictions of neutral theory? Large deficits in regions of low recombination. Heredity (Edinb) 108:167–178. https://doi.org/10.1038/hdy.2011.66

Article  CAS  PubMed  Google Scholar 

Funk WC, Caminer M, Ron SR (2012) High levels of cryptic species diversity uncovered in Amazonian frogs. Proc R Soc B Biol Sci 279:1806–1814. https://doi.org/10.1098/rspb.2011.1653

Article  Google Scholar 

Gao H, Nannan LI, Huang Y et al (2020) Taxonomic status of Chinese blue sheep (Pseudois nayaur): new evidence of a distinct subspecies. Integr Zool 15:202–212. https://doi.org/10.1111/1749-4877.12422

Article  PubMed  Google Scholar 

Gaur A, Singh A, Arunabala V, Umapathy G, Shailaja K, Singh L (2002) Development and characterization of 10 novel microsatellite markers from Chital deer (Cervus axis) and their cross–amplification in other related species. Mol Ecol Notes 3:607–609

Geist V (1987) On the evolution of the caprinae. The biology and management of capricornis and related mountain antelopes. Springer Netherlands, Dordrecht, pp 3–40

Chapter  Google Scholar 

Gupta, SK, Kumar A, Hussain SA (2013) Extraction of PCR-amplifiable DNA from a variety of biological samples with uniform success rate. Conserv Genet Resour 5:215–217

Hassanin A, Delsuc F, Ropiquet A et al (2012) Pattern and timing of diversification of cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. Comptes Rendus - Biol 335:32–50. https://doi.org/10.1016/j.crvi.2011.11.002

Article  Google Scholar 

IUCN 2017 (2017) The IUCN Red List of Threatened Species

Jones KC, Levine KF, Banks JD (2002) Characterization of 11 polymorphic tetranucleotide microsatellites for forensic applications in California elk (Cervus elaphus canadensis) Mol Ecol Notes 2:425–427

Joshi BD, Kumar V, De R et al (2022) Mitochondrial cytochrome b indicates the presence of two paraphyletic diverged lineages of the blue sheep pseudois Nayaur across the Indian himalaya: conservation implications. Mol Biol Rep 49:11177–11186. https://doi.org/10.1007/s11033-022-07832-0

Article  CAS  PubMed  Google Scholar 

Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program < scp > cervus accommodates genotyping error increases success in paternity assignment. Mol Ecol 16:1099–1106. https://doi.org/10.1111/j.1365-294X.2007.03089.x

Article  PubMed  Google Scholar 

Lecis R, Pierpaoli M, Biro ZS et al (2006) Bayesian analyses of admixture in wild and domestic cats (Felis silvestris) using linked microsatellite loci. Mol Ecol 15:119–131. https://doi.org/10.1111/j.1365-294X.2005.02812.x

Article  CAS  PubMed  Google Scholar 

Li J, Fang X (1999) Uplift of the Tibetan plateau and environmental changes. Chin Sci Bull 44:2117–2124. https://doi.org/10.1007/BF03182692

Article  Google Scholar 

Li M, Wei F, Goossens B et al (2005) Mitochondrial phylogeography and subspecific variation in the red panda (Ailurus fulgens): implications for conservation. Mol Phylogenet Evol 36:78–89. https://doi.org/10.1016/j.ympev.2004.12.016

Article  CAS  PubMed  Google Scholar 

Luenser K, Fickel J, Ludwig A (2005) Evolution of caprine and ovine β-defensin genes. Immunogenetics 57:487–498. https://doi.org/10.1007/s00251-005-0001-5

Article  CAS  PubMed  Google Scholar 

Lyngdoh S, Shrotriya S, Goyal SP et al (2014) Prey preferences of the snow Leopard (Panthera uncia): regional diet specificity holds global significance for conservation. PLoS ONE 9:e88349. https://doi.org/10.1371/journal.pone.0088349

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mishra C (1997) Livestock depredation by large carnivores in the Indian trans-Himalaya. Environ Conserv 24:338–343

Article  Google Scholar 

Mishra C, Van Wieren SE, Ketner P et al (2004) Competition between domestic livestock and wild bharal pseudois Nayaur in the Indian Trans-Himalaya. J Appl Ecol 41:344–354. https://doi.org/10.1111/j.0021-8901.2004.00885.x

Article  Google Scholar 

Mukesh, Sharma LK, Kumar VP et al (2013) Loss of genetic diversity and inbreeding in Kashmir red deer (Cervus Elaphus hanglu) of Dachigam National park, Jammu & kashmir, India. BMC Res Notes 6:326. https://doi.org/10.1186/1756-0500-6-326

Article  Google Scholar 

Namgail T, Fox JL, Bhatnagar YV (2004) Habitat segregation between sympatric Tibetan argali Ovis Ammon hodgsoni and blue sheep pseudois Nayaur in the Indian Trans-Himalaya. J Zool 262:57–63. https://doi.org/10.1017/S0952836903004394

Article  Google Scholar 

Oli MK (1996) Seasonal patterns in habitat use of blue sheep pseudois Nayaur (Artiodactyla, Bovidae) in Nepal. Mammalia 60:187–193. https://doi.org/10.1515/mamm.1996.60.2.187

Article  Google Scholar 

Pal R, Panwar A, Goyal SP, Sathyakumar S (2022a) Changes in ecological conditions May influence intraguild competition: inferring interaction patterns of snow Leopard with co-predators. PeerJ 10:e14277. https://doi.org/10.7717/peerj.14277

Article  PubMed  PubMed Central  Google Scholar 

Pal R, Sutherland C, Qureshi Q, Sathyakumar S (2022b) Landscape connectivity and population density of snow leopards across a multi-use landscape in Western himalaya. Anim Conserv 25:414–426. https://doi.org/10.1111/acv.12754

Article  Google Scholar 

Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in excel. Population genetic software for teaching and research—an update. Bioinformatics 28:2537–2539. https://doi.org/10.1093/bioinformatics/bts460

Article  CAS  PubMed  PubMed Central  Google Scholar 

Poetsch M, Seefeldt S, Maschke M, Lignitz E (2001) Analysis of microsatellite polymorphism in red deer, roe deer, and fallow deer: Possible employment in forensic applications. Foren Sci Int 116:1–8

Pritchard JK (2007) Documentation for structure software: Version 2. 2. Statistics (Ber)

Ram AK, Yadav NK, Kandel PN et al (2021) Tracking forest loss and fragmentation between 1930 and 2020 in Asian elephant (Elephas maximus) range in Nepal. Sci Rep 11:1–14. https://doi.org/10.1038/s41598-021-98327-8

Article  CAS  Google Scholar 

Ranjitsinh MK (2017) A life with wildlife: from princely India to the present. haper collins

Saini D, Yadav P, Kolipakam V et al (2023) The complete mitogenome of blue sheep (Pseudois nayaur) from the Indian Himalayan region and its comparative phylogenetic relationship with other related species. Anim Gene 29:200155. https://doi.org/10.1016/j.angen.2023.200155

Article  CAS  Google Scholar 

Saini D, Sonker G, Parab T et al (2025) Molecular taxonomy suggests presence of two distinct lineages of blue sheep (Pseudois nayaur) in Indian Himalayan region. Biochem Genet. https://doi.org/10.1007/s10528-024-11014-x

Article  PubMed  Google Scholar 

Shrestha R, Wegge P (2008) Habitat relationships between wild and domestic ungulates in Nepalese trans-Himalaya. J Arid Environ 72:914–925. https://doi.org/10.1016/j.jaridenv.2007.12.002

Article  Google Scholar 

Shrestha B, Aihartza J, Kindlmann P (2018) Diet and prey selection by snow leopards in the Nepalese Himalayas. PLoS ONE 13:e0206310. https://doi.org/10.1371/journal.pone.0206310

Article  CAS  PubMed 

Comments (0)

No login
gif